Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16020

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16015 and BWI76_RS16020 are separated by 437 nucleotidesBWI76_RS16020 and BWI76_RS16025 overlap by 1 nucleotidesBWI76_RS16025 and BWI76_RS16030 are separated by 17 nucleotides BWI76_RS16015: BWI76_RS16015 - pheromone autoinducer 2 transporter, at 3,320,645 to 3,321,679 _RS16015 BWI76_RS16020: BWI76_RS16020 - malonate decarboxylase subunit alpha, at 3,322,117 to 3,323,772 _RS16020 BWI76_RS16025: BWI76_RS16025 - triphosphoribosyl-dephospho-CoA synthase, at 3,323,772 to 3,324,614 _RS16025 BWI76_RS16030: BWI76_RS16030 - malonate decarboxylase acyl carrier protein, at 3,324,632 to 3,324,931 _RS16030 Position (kb) 3322 3323 3324Strain fitness (log2 ratio) -1 0 1 2at 3321.150 kb on + strand, within BWI76_RS16015at 3321.477 kb on + strand, within BWI76_RS16015at 3321.756 kb on - strandat 3321.872 kb on + strandat 3321.891 kb on - strandat 3322.068 kb on + strandat 3322.445 kb on + strand, within BWI76_RS16020at 3322.509 kb on - strand, within BWI76_RS16020at 3322.596 kb on + strand, within BWI76_RS16020at 3322.604 kb on - strand, within BWI76_RS16020at 3322.910 kb on + strand, within BWI76_RS16020at 3322.965 kb on - strand, within BWI76_RS16020at 3323.076 kb on - strand, within BWI76_RS16020at 3323.385 kb on - strand, within BWI76_RS16020at 3323.525 kb on - strand, within BWI76_RS16020at 3323.737 kb on + strandat 3324.104 kb on - strand, within BWI76_RS16025at 3324.304 kb on - strand, within BWI76_RS16025at 3324.729 kb on - strand, within BWI76_RS16030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
3,321,150 + BWI76_RS16015 0.49 +0.8
3,321,477 + BWI76_RS16015 0.80 -0.1
3,321,756 - -0.4
3,321,872 + +0.7
3,321,891 - +0.3
3,322,068 + -0.4
3,322,445 + BWI76_RS16020 0.20 +0.6
3,322,509 - BWI76_RS16020 0.24 -0.7
3,322,596 + BWI76_RS16020 0.29 -0.4
3,322,604 - BWI76_RS16020 0.29 +0.3
3,322,910 + BWI76_RS16020 0.48 +0.5
3,322,965 - BWI76_RS16020 0.51 +2.1
3,323,076 - BWI76_RS16020 0.58 +0.3
3,323,385 - BWI76_RS16020 0.77 -0.2
3,323,525 - BWI76_RS16020 0.85 +0.2
3,323,737 + +2.1
3,324,104 - BWI76_RS16025 0.39 +1.0
3,324,304 - BWI76_RS16025 0.63 -0.6
3,324,729 - BWI76_RS16030 0.32 +0.6

Or see this region's nucleotide sequence