Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15970 and BWI76_RS15975 are separated by 176 nucleotides BWI76_RS15975 and BWI76_RS15980 are separated by 149 nucleotides BWI76_RS15980 and BWI76_RS15985 overlap by 20 nucleotides BWI76_RS15985 and BWI76_RS15990 are separated by 577 nucleotides
BWI76_RS15970: BWI76_RS15970 - carboxypeptidase M32, at 3,313,078 to 3,314,565
_RS15970
BWI76_RS15975: BWI76_RS15975 - hypothetical protein, at 3,314,742 to 3,315,167
_RS15975
BWI76_RS15980: BWI76_RS15980 - lysine transporter LysE, at 3,315,317 to 3,315,579
_RS15980
BWI76_RS15985: BWI76_RS15985 - LysR family transcriptional regulator, at 3,315,560 to 3,315,784
_RS15985
BWI76_RS15990: BWI76_RS15990 - serine protease, at 3,316,362 to 3,317,174
_RS15990
Position (kb)
3315
3316 Strain fitness (log2 ratio)
-1
0
1 at 3314.645 kb on + strand at 3314.730 kb on + strand at 3314.782 kb on - strand at 3314.982 kb on + strand, within BWI76_RS15975 at 3315.261 kb on - strand at 3315.433 kb on - strand, within BWI76_RS15980 at 3315.584 kb on + strand, within BWI76_RS15985 at 3315.602 kb on + strand, within BWI76_RS15985 at 3315.610 kb on - strand, within BWI76_RS15985 at 3315.746 kb on - strand, within BWI76_RS15985 at 3315.951 kb on + strand at 3315.968 kb on - strand at 3316.079 kb on - strand at 3316.079 kb on - strand at 3316.364 kb on + strand at 3316.364 kb on + strand at 3316.372 kb on - strand at 3316.415 kb on + strand at 3316.540 kb on - strand, within BWI76_RS15990
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 3,314,645 + -0.1 3,314,730 + -0.2 3,314,782 - -0.4 3,314,982 + BWI76_RS15975 0.56 -0.1 3,315,261 - +0.2 3,315,433 - BWI76_RS15980 0.44 +0.3 3,315,584 + BWI76_RS15985 0.11 +0.1 3,315,602 + BWI76_RS15985 0.19 +0.5 3,315,610 - BWI76_RS15985 0.22 -0.4 3,315,746 - BWI76_RS15985 0.83 +0.0 3,315,951 + +0.7 3,315,968 - -0.5 3,316,079 - +0.0 3,316,079 - -0.6 3,316,364 + +0.1 3,316,364 + +0.7 3,316,372 - +0.1 3,316,415 + +0.0 3,316,540 - BWI76_RS15990 0.22 -0.4
Or see this region's nucleotide sequence