Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15960

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15955 and BWI76_RS15960 are separated by 133 nucleotidesBWI76_RS15960 and BWI76_RS15965 are separated by 118 nucleotides BWI76_RS15955: BWI76_RS15955 - transcriptional regulator, at 3,309,042 to 3,310,262 _RS15955 BWI76_RS15960: BWI76_RS15960 - LysR family transcriptional regulator, at 3,310,396 to 3,311,289 _RS15960 BWI76_RS15965: BWI76_RS15965 - MFS transporter, at 3,311,408 to 3,312,658 _RS15965 Position (kb) 3310 3311 3312Strain fitness (log2 ratio) -1 0 1 2at 3309.514 kb on + strand, within BWI76_RS15955at 3309.600 kb on + strand, within BWI76_RS15955at 3309.970 kb on - strand, within BWI76_RS15955at 3310.318 kb on - strandat 3310.856 kb on - strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.865 kb on + strand, within BWI76_RS15960at 3310.923 kb on + strand, within BWI76_RS15960at 3311.214 kb on - strandat 3311.239 kb on + strandat 3311.387 kb on - strandat 3311.568 kb on - strand, within BWI76_RS15965at 3311.623 kb on + strand, within BWI76_RS15965at 3312.025 kb on + strand, within BWI76_RS15965

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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3,309,514 + BWI76_RS15955 0.39 -0.3
3,309,600 + BWI76_RS15955 0.46 -0.2
3,309,970 - BWI76_RS15955 0.76 -0.5
3,310,318 - -0.5
3,310,856 - BWI76_RS15960 0.51 +0.0
3,310,865 + BWI76_RS15960 0.52 +0.7
3,310,865 + BWI76_RS15960 0.52 +1.2
3,310,923 + BWI76_RS15960 0.59 -0.6
3,311,214 - +2.0
3,311,239 + +0.1
3,311,387 - -0.1
3,311,568 - BWI76_RS15965 0.13 -1.1
3,311,623 + BWI76_RS15965 0.17 -0.4
3,312,025 + BWI76_RS15965 0.49 -0.0

Or see this region's nucleotide sequence