Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15530

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15525 and BWI76_RS15530 overlap by 14 nucleotidesBWI76_RS15530 and BWI76_RS15535 overlap by 4 nucleotidesBWI76_RS15535 and BWI76_RS15540 overlap by 1 nucleotides BWI76_RS15525: BWI76_RS15525 - hypothetical protein, at 3,252,704 to 3,255,181 _RS15525 BWI76_RS15530: BWI76_RS15530 - hypothetical protein, at 3,255,168 to 3,255,563 _RS15530 BWI76_RS15535: BWI76_RS15535 - hypothetical protein, at 3,255,560 to 3,256,030 _RS15535 BWI76_RS15540: BWI76_RS15540 - hypothetical protein, at 3,256,030 to 3,256,506 _RS15540 Position (kb) 3255 3256Strain fitness (log2 ratio) -1 0 1at 3254.199 kb on - strand, within BWI76_RS15525at 3254.204 kb on - strand, within BWI76_RS15525at 3254.209 kb on - strand, within BWI76_RS15525at 3254.622 kb on + strand, within BWI76_RS15525at 3254.692 kb on + strand, within BWI76_RS15525at 3254.700 kb on - strand, within BWI76_RS15525at 3254.829 kb on + strand, within BWI76_RS15525at 3255.017 kb on - strandat 3255.432 kb on + strand, within BWI76_RS15530at 3255.517 kb on + strandat 3255.517 kb on + strand, within BWI76_RS15530at 3255.525 kb on - strandat 3255.525 kb on - strandat 3255.555 kb on - strandat 3255.574 kb on + strandat 3255.574 kb on + strandat 3255.582 kb on - strandat 3255.582 kb on - strandat 3255.642 kb on - strand, within BWI76_RS15535at 3255.854 kb on - strand, within BWI76_RS15535at 3255.979 kb on + strand, within BWI76_RS15535at 3255.987 kb on - strandat 3256.015 kb on + strandat 3256.131 kb on + strand, within BWI76_RS15540at 3256.328 kb on + strand, within BWI76_RS15540at 3256.375 kb on - strand, within BWI76_RS15540at 3256.428 kb on + strand, within BWI76_RS15540at 3256.433 kb on + strand, within BWI76_RS15540at 3256.433 kb on + strand, within BWI76_RS15540at 3256.441 kb on - strand, within BWI76_RS15540at 3256.450 kb on + strand, within BWI76_RS15540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
3,254,199 - BWI76_RS15525 0.60 +0.1
3,254,204 - BWI76_RS15525 0.61 +0.1
3,254,209 - BWI76_RS15525 0.61 -0.4
3,254,622 + BWI76_RS15525 0.77 -0.4
3,254,692 + BWI76_RS15525 0.80 -0.0
3,254,700 - BWI76_RS15525 0.81 -0.2
3,254,829 + BWI76_RS15525 0.86 -0.1
3,255,017 - +0.2
3,255,432 + BWI76_RS15530 0.67 +0.4
3,255,517 + -0.7
3,255,517 + BWI76_RS15530 0.88 +0.2
3,255,525 - -0.4
3,255,525 - -0.3
3,255,555 - +0.0
3,255,574 + +0.3
3,255,574 + +0.0
3,255,582 - +0.4
3,255,582 - -0.9
3,255,642 - BWI76_RS15535 0.17 +0.3
3,255,854 - BWI76_RS15535 0.62 -0.6
3,255,979 + BWI76_RS15535 0.89 -0.2
3,255,987 - -0.3
3,256,015 + -0.5
3,256,131 + BWI76_RS15540 0.21 +0.1
3,256,328 + BWI76_RS15540 0.62 +0.6
3,256,375 - BWI76_RS15540 0.72 -0.1
3,256,428 + BWI76_RS15540 0.83 -0.2
3,256,433 + BWI76_RS15540 0.84 -1.2
3,256,433 + BWI76_RS15540 0.84 -0.2
3,256,441 - BWI76_RS15540 0.86 +1.0
3,256,450 + BWI76_RS15540 0.88 +0.1

Or see this region's nucleotide sequence