Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14390

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14385 and BWI76_RS14390 overlap by 17 nucleotidesBWI76_RS14390 and BWI76_RS14395 are separated by 517 nucleotidesBWI76_RS14395 and BWI76_RS14400 are separated by 110 nucleotides BWI76_RS14385: BWI76_RS14385 - hypothetical protein, at 3,005,453 to 3,007,003 _RS14385 BWI76_RS14390: BWI76_RS14390 - hypothetical protein, at 3,006,987 to 3,007,862 _RS14390 BWI76_RS14395: BWI76_RS14395 - hypothetical protein, at 3,008,380 to 3,008,517 _RS14395 BWI76_RS14400: BWI76_RS14400 - ISNCY family transposase, at 3,008,628 to 3,009,198 _RS14400 Position (kb) 3006 3007 3008Strain fitness (log2 ratio) -1 0 1at 3005.998 kb on + strand, within BWI76_RS14385at 3006.006 kb on - strand, within BWI76_RS14385at 3006.146 kb on - strand, within BWI76_RS14385at 3006.164 kb on + strandat 3006.242 kb on + strand, within BWI76_RS14385at 3006.350 kb on - strand, within BWI76_RS14385at 3006.356 kb on - strand, within BWI76_RS14385at 3006.366 kb on - strand, within BWI76_RS14385at 3006.403 kb on - strand, within BWI76_RS14385at 3006.480 kb on - strand, within BWI76_RS14385at 3006.571 kb on + strand, within BWI76_RS14385at 3006.658 kb on + strand, within BWI76_RS14385at 3006.792 kb on + strand, within BWI76_RS14385at 3006.799 kb on - strand, within BWI76_RS14385at 3007.025 kb on + strandat 3007.224 kb on - strandat 3007.224 kb on - strand, within BWI76_RS14390at 3007.224 kb on - strand, within BWI76_RS14390at 3007.860 kb on + strandat 3008.043 kb on + strandat 3008.043 kb on + strandat 3008.045 kb on + strandat 3008.045 kb on + strandat 3008.077 kb on - strandat 3008.160 kb on - strandat 3008.247 kb on + strandat 3008.260 kb on + strandat 3008.260 kb on + strandat 3008.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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3,005,998 + BWI76_RS14385 0.35 +0.4
3,006,006 - BWI76_RS14385 0.36 -0.3
3,006,146 - BWI76_RS14385 0.45 +1.5
3,006,164 + +1.6
3,006,242 + BWI76_RS14385 0.51 -1.2
3,006,350 - BWI76_RS14385 0.58 +0.2
3,006,356 - BWI76_RS14385 0.58 +0.7
3,006,366 - BWI76_RS14385 0.59 -0.2
3,006,403 - BWI76_RS14385 0.61 -0.1
3,006,480 - BWI76_RS14385 0.66 -0.3
3,006,571 + BWI76_RS14385 0.72 -1.1
3,006,658 + BWI76_RS14385 0.78 -0.2
3,006,792 + BWI76_RS14385 0.86 +0.1
3,006,799 - BWI76_RS14385 0.87 -1.1
3,007,025 + +1.2
3,007,224 - -0.2
3,007,224 - BWI76_RS14390 0.27 -1.0
3,007,224 - BWI76_RS14390 0.27 -0.6
3,007,860 + +0.6
3,008,043 + +0.5
3,008,043 + +0.1
3,008,045 + +0.4
3,008,045 + +0.3
3,008,077 - -0.3
3,008,160 - -0.3
3,008,247 + +0.1
3,008,260 + +0.6
3,008,260 + +0.5
3,008,605 - -0.7

Or see this region's nucleotide sequence