Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13045 and BWI76_RS13050 are separated by 148 nucleotides BWI76_RS13050 and BWI76_RS13055 are separated by 128 nucleotides BWI76_RS13055 and BWI76_RS13060 are separated by 226 nucleotides BWI76_RS13060 and BWI76_RS13065 are separated by 120 nucleotides
BWI76_RS13045: BWI76_RS13045 - hypothetical protein, at 2,722,147 to 2,722,542
_RS13045
BWI76_RS13050: BWI76_RS13050 - transcriptional regulator, at 2,722,691 to 2,723,125
_RS13050
BWI76_RS13055: BWI76_RS13055 - NmrA family protein, at 2,723,254 to 2,724,165
_RS13055
BWI76_RS13060: BWI76_RS13060 - glutathione S-transferase, at 2,724,392 to 2,724,997
_RS13060
BWI76_RS13065: BWI76_RS13065 - LysR family transcriptional regulator, at 2,725,118 to 2,725,993
_RS13065
Position (kb)
2723
2724
2725 Strain fitness (log2 ratio)
-2
-1
0
1 at 2722.350 kb on - strand, within BWI76_RS13045 at 2722.350 kb on - strand, within BWI76_RS13045 at 2722.356 kb on + strand, within BWI76_RS13045 at 2722.393 kb on + strand, within BWI76_RS13045 at 2722.416 kb on - strand, within BWI76_RS13045 at 2722.472 kb on - strand, within BWI76_RS13045 at 2722.590 kb on + strand at 2722.672 kb on + strand at 2722.673 kb on + strand at 2722.701 kb on + strand at 2722.920 kb on - strand, within BWI76_RS13050 at 2723.196 kb on + strand at 2723.535 kb on - strand, within BWI76_RS13055 at 2723.740 kb on + strand, within BWI76_RS13055 at 2723.740 kb on + strand, within BWI76_RS13055 at 2723.809 kb on + strand, within BWI76_RS13055 at 2724.098 kb on - strand at 2724.139 kb on + strand at 2724.509 kb on + strand, within BWI76_RS13060 at 2724.509 kb on + strand, within BWI76_RS13060 at 2724.647 kb on - strand, within BWI76_RS13060 at 2724.649 kb on + strand, within BWI76_RS13060 at 2724.954 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 2,722,350 - BWI76_RS13045 0.51 -2.0 2,722,350 - BWI76_RS13045 0.51 -0.0 2,722,356 + BWI76_RS13045 0.53 -0.2 2,722,393 + BWI76_RS13045 0.62 -0.4 2,722,416 - BWI76_RS13045 0.68 -1.1 2,722,472 - BWI76_RS13045 0.82 +0.2 2,722,590 + -0.1 2,722,672 + -0.6 2,722,673 + -0.0 2,722,701 + -0.2 2,722,920 - BWI76_RS13050 0.53 -0.3 2,723,196 + +0.3 2,723,535 - BWI76_RS13055 0.31 +0.3 2,723,740 + BWI76_RS13055 0.53 +0.4 2,723,740 + BWI76_RS13055 0.53 +0.1 2,723,809 + BWI76_RS13055 0.61 -0.0 2,724,098 - +0.2 2,724,139 + -0.0 2,724,509 + BWI76_RS13060 0.19 -0.4 2,724,509 + BWI76_RS13060 0.19 +0.3 2,724,647 - BWI76_RS13060 0.42 -0.1 2,724,649 + BWI76_RS13060 0.42 -0.6 2,724,954 - +0.6
Or see this region's nucleotide sequence