Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13055

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13045 and BWI76_RS13050 are separated by 148 nucleotidesBWI76_RS13050 and BWI76_RS13055 are separated by 128 nucleotidesBWI76_RS13055 and BWI76_RS13060 are separated by 226 nucleotidesBWI76_RS13060 and BWI76_RS13065 are separated by 120 nucleotides BWI76_RS13045: BWI76_RS13045 - hypothetical protein, at 2,722,147 to 2,722,542 _RS13045 BWI76_RS13050: BWI76_RS13050 - transcriptional regulator, at 2,722,691 to 2,723,125 _RS13050 BWI76_RS13055: BWI76_RS13055 - NmrA family protein, at 2,723,254 to 2,724,165 _RS13055 BWI76_RS13060: BWI76_RS13060 - glutathione S-transferase, at 2,724,392 to 2,724,997 _RS13060 BWI76_RS13065: BWI76_RS13065 - LysR family transcriptional regulator, at 2,725,118 to 2,725,993 _RS13065 Position (kb) 2723 2724 2725Strain fitness (log2 ratio) -2 -1 0 1at 2722.350 kb on - strand, within BWI76_RS13045at 2722.350 kb on - strand, within BWI76_RS13045at 2722.356 kb on + strand, within BWI76_RS13045at 2722.393 kb on + strand, within BWI76_RS13045at 2722.416 kb on - strand, within BWI76_RS13045at 2722.472 kb on - strand, within BWI76_RS13045at 2722.590 kb on + strandat 2722.672 kb on + strandat 2722.673 kb on + strandat 2722.701 kb on + strandat 2722.920 kb on - strand, within BWI76_RS13050at 2723.196 kb on + strandat 2723.535 kb on - strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.740 kb on + strand, within BWI76_RS13055at 2723.809 kb on + strand, within BWI76_RS13055at 2724.098 kb on - strandat 2724.139 kb on + strandat 2724.509 kb on + strand, within BWI76_RS13060at 2724.509 kb on + strand, within BWI76_RS13060at 2724.647 kb on - strand, within BWI76_RS13060at 2724.649 kb on + strand, within BWI76_RS13060at 2724.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,722,350 - BWI76_RS13045 0.51 -2.0
2,722,350 - BWI76_RS13045 0.51 -0.0
2,722,356 + BWI76_RS13045 0.53 -0.2
2,722,393 + BWI76_RS13045 0.62 -0.4
2,722,416 - BWI76_RS13045 0.68 -1.1
2,722,472 - BWI76_RS13045 0.82 +0.2
2,722,590 + -0.1
2,722,672 + -0.6
2,722,673 + -0.0
2,722,701 + -0.2
2,722,920 - BWI76_RS13050 0.53 -0.3
2,723,196 + +0.3
2,723,535 - BWI76_RS13055 0.31 +0.3
2,723,740 + BWI76_RS13055 0.53 +0.4
2,723,740 + BWI76_RS13055 0.53 +0.1
2,723,809 + BWI76_RS13055 0.61 -0.0
2,724,098 - +0.2
2,724,139 + -0.0
2,724,509 + BWI76_RS13060 0.19 -0.4
2,724,509 + BWI76_RS13060 0.19 +0.3
2,724,647 - BWI76_RS13060 0.42 -0.1
2,724,649 + BWI76_RS13060 0.42 -0.6
2,724,954 - +0.6

Or see this region's nucleotide sequence