Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS12260 and BWI76_RS12265 are separated by 106 nucleotides BWI76_RS12265 and BWI76_RS12270 are separated by 87 nucleotides BWI76_RS12270 and BWI76_RS12275 are separated by 38 nucleotides BWI76_RS12275 and BWI76_RS12280 are separated by 3 nucleotides BWI76_RS12280 and BWI76_RS12285 are separated by 1 nucleotides
BWI76_RS12260: BWI76_RS12260 - hypothetical protein, at 2,562,402 to 2,563,514
_RS12260
BWI76_RS12265: BWI76_RS12265 - hypothetical protein, at 2,563,621 to 2,564,385
_RS12265
BWI76_RS12270: BWI76_RS12270 - hypothetical protein, at 2,564,473 to 2,565,609
_RS12270
BWI76_RS12275: BWI76_RS12275 - hypothetical protein, at 2,565,648 to 2,565,857
_RS12275
BWI76_RS12280: BWI76_RS12280 - hypothetical protein, at 2,565,861 to 2,566,271
_RS12280
BWI76_RS12285: BWI76_RS12285 - hypothetical protein, at 2,566,273 to 2,566,656
_RS12285
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-1
0
1 at 2563.729 kb on + strand, within BWI76_RS12265 at 2563.737 kb on - strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.917 kb on + strand, within BWI76_RS12265 at 2563.969 kb on - strand, within BWI76_RS12265 at 2564.325 kb on - strand at 2564.464 kb on + strand at 2564.523 kb on - strand at 2564.565 kb on - strand at 2564.656 kb on - strand, within BWI76_RS12270 at 2564.889 kb on + strand at 2564.902 kb on + strand, within BWI76_RS12270 at 2565.276 kb on + strand, within BWI76_RS12270 at 2565.387 kb on - strand, within BWI76_RS12270 at 2565.555 kb on + strand at 2565.724 kb on + strand, within BWI76_RS12275 at 2565.732 kb on - strand, within BWI76_RS12275 at 2565.801 kb on - strand, within BWI76_RS12275 at 2565.805 kb on + strand, within BWI76_RS12275 at 2565.813 kb on - strand, within BWI76_RS12275 at 2565.816 kb on - strand, within BWI76_RS12275 at 2565.917 kb on - strand, within BWI76_RS12280 at 2565.970 kb on + strand, within BWI76_RS12280 at 2565.978 kb on - strand, within BWI76_RS12280 at 2565.992 kb on + strand, within BWI76_RS12280 at 2566.222 kb on - strand, within BWI76_RS12280 at 2566.356 kb on + strand, within BWI76_RS12285 at 2566.435 kb on + strand, within BWI76_RS12285
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 2,563,729 + BWI76_RS12265 0.14 -0.9 2,563,737 - BWI76_RS12265 0.15 -0.5 2,563,917 + BWI76_RS12265 0.39 +0.1 2,563,917 + BWI76_RS12265 0.39 +0.1 2,563,917 + BWI76_RS12265 0.39 -0.5 2,563,969 - BWI76_RS12265 0.45 +0.2 2,564,325 - -1.0 2,564,464 + -0.4 2,564,523 - +0.1 2,564,565 - -0.5 2,564,656 - BWI76_RS12270 0.16 +1.5 2,564,889 + +0.2 2,564,902 + BWI76_RS12270 0.38 +0.1 2,565,276 + BWI76_RS12270 0.71 -0.5 2,565,387 - BWI76_RS12270 0.80 +0.5 2,565,555 + -0.5 2,565,724 + BWI76_RS12275 0.36 -0.4 2,565,732 - BWI76_RS12275 0.40 -0.3 2,565,801 - BWI76_RS12275 0.73 +0.0 2,565,805 + BWI76_RS12275 0.75 -0.4 2,565,813 - BWI76_RS12275 0.79 -0.5 2,565,816 - BWI76_RS12275 0.80 -0.2 2,565,917 - BWI76_RS12280 0.14 -0.6 2,565,970 + BWI76_RS12280 0.27 -0.3 2,565,978 - BWI76_RS12280 0.28 -0.2 2,565,992 + BWI76_RS12280 0.32 -0.1 2,566,222 - BWI76_RS12280 0.88 -1.1 2,566,356 + BWI76_RS12285 0.22 -1.0 2,566,435 + BWI76_RS12285 0.42 -0.1
Or see this region's nucleotide sequence