Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12270

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12260 and BWI76_RS12265 are separated by 106 nucleotidesBWI76_RS12265 and BWI76_RS12270 are separated by 87 nucleotidesBWI76_RS12270 and BWI76_RS12275 are separated by 38 nucleotidesBWI76_RS12275 and BWI76_RS12280 are separated by 3 nucleotidesBWI76_RS12280 and BWI76_RS12285 are separated by 1 nucleotides BWI76_RS12260: BWI76_RS12260 - hypothetical protein, at 2,562,402 to 2,563,514 _RS12260 BWI76_RS12265: BWI76_RS12265 - hypothetical protein, at 2,563,621 to 2,564,385 _RS12265 BWI76_RS12270: BWI76_RS12270 - hypothetical protein, at 2,564,473 to 2,565,609 _RS12270 BWI76_RS12275: BWI76_RS12275 - hypothetical protein, at 2,565,648 to 2,565,857 _RS12275 BWI76_RS12280: BWI76_RS12280 - hypothetical protein, at 2,565,861 to 2,566,271 _RS12280 BWI76_RS12285: BWI76_RS12285 - hypothetical protein, at 2,566,273 to 2,566,656 _RS12285 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -1 0 1at 2563.729 kb on + strand, within BWI76_RS12265at 2563.737 kb on - strand, within BWI76_RS12265at 2563.917 kb on + strand, within BWI76_RS12265at 2563.917 kb on + strand, within BWI76_RS12265at 2563.917 kb on + strand, within BWI76_RS12265at 2563.969 kb on - strand, within BWI76_RS12265at 2564.325 kb on - strandat 2564.464 kb on + strandat 2564.523 kb on - strandat 2564.565 kb on - strandat 2564.656 kb on - strand, within BWI76_RS12270at 2564.889 kb on + strandat 2564.902 kb on + strand, within BWI76_RS12270at 2565.276 kb on + strand, within BWI76_RS12270at 2565.387 kb on - strand, within BWI76_RS12270at 2565.555 kb on + strandat 2565.724 kb on + strand, within BWI76_RS12275at 2565.732 kb on - strand, within BWI76_RS12275at 2565.801 kb on - strand, within BWI76_RS12275at 2565.805 kb on + strand, within BWI76_RS12275at 2565.813 kb on - strand, within BWI76_RS12275at 2565.816 kb on - strand, within BWI76_RS12275at 2565.917 kb on - strand, within BWI76_RS12280at 2565.970 kb on + strand, within BWI76_RS12280at 2565.978 kb on - strand, within BWI76_RS12280at 2565.992 kb on + strand, within BWI76_RS12280at 2566.222 kb on - strand, within BWI76_RS12280at 2566.356 kb on + strand, within BWI76_RS12285at 2566.435 kb on + strand, within BWI76_RS12285

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,563,729 + BWI76_RS12265 0.14 -0.9
2,563,737 - BWI76_RS12265 0.15 -0.5
2,563,917 + BWI76_RS12265 0.39 +0.1
2,563,917 + BWI76_RS12265 0.39 +0.1
2,563,917 + BWI76_RS12265 0.39 -0.5
2,563,969 - BWI76_RS12265 0.45 +0.2
2,564,325 - -1.0
2,564,464 + -0.4
2,564,523 - +0.1
2,564,565 - -0.5
2,564,656 - BWI76_RS12270 0.16 +1.5
2,564,889 + +0.2
2,564,902 + BWI76_RS12270 0.38 +0.1
2,565,276 + BWI76_RS12270 0.71 -0.5
2,565,387 - BWI76_RS12270 0.80 +0.5
2,565,555 + -0.5
2,565,724 + BWI76_RS12275 0.36 -0.4
2,565,732 - BWI76_RS12275 0.40 -0.3
2,565,801 - BWI76_RS12275 0.73 +0.0
2,565,805 + BWI76_RS12275 0.75 -0.4
2,565,813 - BWI76_RS12275 0.79 -0.5
2,565,816 - BWI76_RS12275 0.80 -0.2
2,565,917 - BWI76_RS12280 0.14 -0.6
2,565,970 + BWI76_RS12280 0.27 -0.3
2,565,978 - BWI76_RS12280 0.28 -0.2
2,565,992 + BWI76_RS12280 0.32 -0.1
2,566,222 - BWI76_RS12280 0.88 -1.1
2,566,356 + BWI76_RS12285 0.22 -1.0
2,566,435 + BWI76_RS12285 0.42 -0.1

Or see this region's nucleotide sequence