Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11360

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11355 and BWI76_RS11360 are separated by 278 nucleotidesBWI76_RS11360 and BWI76_RS11365 are separated by 36 nucleotidesBWI76_RS11365 and BWI76_RS11370 are separated by 0 nucleotides BWI76_RS11355: BWI76_RS11355 - phosphodiesterase, at 2,392,835 to 2,394,022 _RS11355 BWI76_RS11360: BWI76_RS11360 - L-asparaginase, at 2,394,301 to 2,395,344 _RS11360 BWI76_RS11365: BWI76_RS11365 - iron ABC transporter, at 2,395,381 to 2,396,148 _RS11365 BWI76_RS11370: BWI76_RS11370 - iron-dicitrate transporter subunit FecD, at 2,396,149 to 2,397,102 _RS11370 Position (kb) 2394 2395 2396Strain fitness (log2 ratio) -1 0 1at 2393.352 kb on - strand, within BWI76_RS11355at 2393.354 kb on + strand, within BWI76_RS11355at 2393.362 kb on + strand, within BWI76_RS11355at 2393.362 kb on + strand, within BWI76_RS11355at 2393.535 kb on + strand, within BWI76_RS11355at 2393.543 kb on - strand, within BWI76_RS11355at 2393.679 kb on - strand, within BWI76_RS11355at 2393.776 kb on + strand, within BWI76_RS11355at 2393.898 kb on + strand, within BWI76_RS11355at 2393.898 kb on + strand, within BWI76_RS11355at 2393.932 kb on - strandat 2393.953 kb on - strandat 2394.058 kb on - strandat 2394.092 kb on - strandat 2394.128 kb on - strandat 2394.143 kb on + strandat 2394.166 kb on + strandat 2394.477 kb on + strand, within BWI76_RS11360at 2394.477 kb on + strand, within BWI76_RS11360at 2394.485 kb on - strand, within BWI76_RS11360at 2394.498 kb on + strand, within BWI76_RS11360at 2394.598 kb on - strand, within BWI76_RS11360at 2395.329 kb on + strandat 2395.541 kb on + strand, within BWI76_RS11365at 2395.551 kb on + strand, within BWI76_RS11365at 2395.784 kb on - strand, within BWI76_RS11365at 2396.128 kb on - strandat 2396.177 kb on + strandat 2396.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,393,352 - BWI76_RS11355 0.44 +1.3
2,393,354 + BWI76_RS11355 0.44 -0.6
2,393,362 + BWI76_RS11355 0.44 -0.5
2,393,362 + BWI76_RS11355 0.44 -0.0
2,393,535 + BWI76_RS11355 0.59 -0.3
2,393,543 - BWI76_RS11355 0.60 -0.0
2,393,679 - BWI76_RS11355 0.71 -0.1
2,393,776 + BWI76_RS11355 0.79 -0.3
2,393,898 + BWI76_RS11355 0.89 -0.1
2,393,898 + BWI76_RS11355 0.89 -0.0
2,393,932 - -0.9
2,393,953 - +0.3
2,394,058 - -0.1
2,394,092 - -0.3
2,394,128 - +0.4
2,394,143 + -0.1
2,394,166 + +0.1
2,394,477 + BWI76_RS11360 0.17 -0.0
2,394,477 + BWI76_RS11360 0.17 +0.3
2,394,485 - BWI76_RS11360 0.18 +0.4
2,394,498 + BWI76_RS11360 0.19 +1.7
2,394,598 - BWI76_RS11360 0.28 +0.3
2,395,329 + +0.1
2,395,541 + BWI76_RS11365 0.21 -0.8
2,395,551 + BWI76_RS11365 0.22 -0.3
2,395,784 - BWI76_RS11365 0.52 +1.1
2,396,128 - -1.2
2,396,177 + -0.5
2,396,210 + +0.2

Or see this region's nucleotide sequence