Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11130

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11125 and BWI76_RS11130 are separated by 297 nucleotidesBWI76_RS11130 and BWI76_RS11135 are separated by 102 nucleotides BWI76_RS11125: BWI76_RS11125 - metal-dependent hydrolase, at 2,345,469 to 2,346,263 _RS11125 BWI76_RS11130: BWI76_RS11130 - PTS glucose transporter subunit IIBC, at 2,346,561 to 2,347,994 _RS11130 BWI76_RS11135: BWI76_RS11135 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 2,348,097 to 2,350,283 _RS11135 Position (kb) 2346 2347 2348Strain fitness (log2 ratio) -2 -1 0 1at 2346.003 kb on + strand, within BWI76_RS11125at 2346.283 kb on - strandat 2346.475 kb on + strandat 2346.725 kb on - strand, within BWI76_RS11130at 2346.881 kb on - strand, within BWI76_RS11130at 2347.171 kb on + strand, within BWI76_RS11130at 2347.272 kb on - strand, within BWI76_RS11130at 2347.279 kb on + strand, within BWI76_RS11130at 2347.442 kb on - strand, within BWI76_RS11130at 2347.518 kb on + strand, within BWI76_RS11130at 2347.526 kb on - strand, within BWI76_RS11130at 2347.736 kb on - strand, within BWI76_RS11130at 2348.199 kb on - strandat 2348.210 kb on - strandat 2348.255 kb on + strandat 2348.408 kb on + strand, within BWI76_RS11135at 2348.416 kb on - strand, within BWI76_RS11135at 2348.416 kb on - strand, within BWI76_RS11135at 2348.467 kb on - strand, within BWI76_RS11135at 2348.748 kb on + strand, within BWI76_RS11135at 2348.765 kb on - strand, within BWI76_RS11135

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,346,003 + BWI76_RS11125 0.67 -0.3
2,346,283 - +0.1
2,346,475 + +0.2
2,346,725 - BWI76_RS11130 0.11 -1.0
2,346,881 - BWI76_RS11130 0.22 -0.7
2,347,171 + BWI76_RS11130 0.43 -1.5
2,347,272 - BWI76_RS11130 0.50 -0.5
2,347,279 + BWI76_RS11130 0.50 -0.5
2,347,442 - BWI76_RS11130 0.61 -1.3
2,347,518 + BWI76_RS11130 0.67 -0.0
2,347,526 - BWI76_RS11130 0.67 -1.9
2,347,736 - BWI76_RS11130 0.82 -0.7
2,348,199 - -0.9
2,348,210 - +0.1
2,348,255 + +0.0
2,348,408 + BWI76_RS11135 0.14 -1.0
2,348,416 - BWI76_RS11135 0.15 -0.6
2,348,416 - BWI76_RS11135 0.15 -0.1
2,348,467 - BWI76_RS11135 0.17 -1.0
2,348,748 + BWI76_RS11135 0.30 +0.5
2,348,765 - BWI76_RS11135 0.31 -0.1

Or see this region's nucleotide sequence