Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09755

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09745 and BWI76_RS09750 are separated by 114 nucleotidesBWI76_RS09750 and BWI76_RS09755 are separated by 186 nucleotidesBWI76_RS09755 and BWI76_RS09760 are separated by 72 nucleotides BWI76_RS09745: BWI76_RS09745 - 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO, at 2,043,401 to 2,045,161 _RS09745 BWI76_RS09750: BWI76_RS09750 - DUF421 domain-containing protein, at 2,045,276 to 2,045,968 _RS09750 BWI76_RS09755: BWI76_RS09755 - phosphoserine transaminase, at 2,046,155 to 2,047,243 _RS09755 BWI76_RS09760: BWI76_RS09760 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,047,316 to 2,048,599 _RS09760 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2045.259 kb on - strandat 2045.259 kb on - strandat 2045.337 kb on + strandat 2045.347 kb on + strand, within BWI76_RS09750at 2045.354 kb on + strand, within BWI76_RS09750at 2045.361 kb on - strand, within BWI76_RS09750at 2045.433 kb on - strand, within BWI76_RS09750at 2045.490 kb on + strand, within BWI76_RS09750at 2045.778 kb on - strand, within BWI76_RS09750at 2045.796 kb on + strand, within BWI76_RS09750at 2045.934 kb on + strandat 2045.999 kb on - strandat 2046.054 kb on - strandat 2046.172 kb on + strandat 2046.342 kb on - strand, within BWI76_RS09755at 2046.471 kb on + strand, within BWI76_RS09755at 2046.808 kb on - strand, within BWI76_RS09755at 2046.851 kb on + strand, within BWI76_RS09755at 2046.910 kb on - strand, within BWI76_RS09755at 2046.910 kb on - strand, within BWI76_RS09755at 2046.931 kb on + strand, within BWI76_RS09755at 2046.972 kb on - strand, within BWI76_RS09755at 2047.428 kb on + strandat 2048.002 kb on + strand, within BWI76_RS09760at 2048.002 kb on + strand, within BWI76_RS09760at 2048.002 kb on + strand, within BWI76_RS09760at 2048.119 kb on - strand, within BWI76_RS09760

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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2,045,259 - -0.2
2,045,259 - -1.9
2,045,337 + -0.5
2,045,347 + BWI76_RS09750 0.10 +0.2
2,045,354 + BWI76_RS09750 0.11 +0.3
2,045,361 - BWI76_RS09750 0.12 -0.2
2,045,433 - BWI76_RS09750 0.23 +0.3
2,045,490 + BWI76_RS09750 0.31 -0.3
2,045,778 - BWI76_RS09750 0.72 -0.3
2,045,796 + BWI76_RS09750 0.75 +0.9
2,045,934 + -0.2
2,045,999 - -1.0
2,046,054 - +0.1
2,046,172 + -5.2
2,046,342 - BWI76_RS09755 0.17 -2.9
2,046,471 + BWI76_RS09755 0.29 -2.1
2,046,808 - BWI76_RS09755 0.60 -4.8
2,046,851 + BWI76_RS09755 0.64 -1.0
2,046,910 - BWI76_RS09755 0.69 -4.9
2,046,910 - BWI76_RS09755 0.69 -5.1
2,046,931 + BWI76_RS09755 0.71 -5.0
2,046,972 - BWI76_RS09755 0.75 -1.2
2,047,428 + -2.9
2,048,002 + BWI76_RS09760 0.53 -1.0
2,048,002 + BWI76_RS09760 0.53 -3.0
2,048,002 + BWI76_RS09760 0.53 -5.5
2,048,119 - BWI76_RS09760 0.63 -3.0

Or see this region's nucleotide sequence