Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09505

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09500 and BWI76_RS09505 are separated by 173 nucleotidesBWI76_RS09505 and BWI76_RS09510 overlap by 1 nucleotidesBWI76_RS09510 and BWI76_RS09515 are separated by 6 nucleotides BWI76_RS09500: BWI76_RS09500 - arginine ABC transporter substrate-binding protein, at 1,988,931 to 1,989,662 _RS09500 BWI76_RS09505: BWI76_RS09505 - arginine transporter permease subunit ArtM, at 1,989,836 to 1,990,504 _RS09505 BWI76_RS09510: BWI76_RS09510 - arginine transporter permease subunit ArtQ, at 1,990,504 to 1,991,220 _RS09510 BWI76_RS09515: BWI76_RS09515 - arginine ABC transporter substrate-binding protein, at 1,991,227 to 1,991,958 _RS09515 Position (kb) 1989 1990 1991Strain fitness (log2 ratio) -1 0 1 2at 1989.346 kb on + strand, within BWI76_RS09500at 1989.354 kb on - strandat 1989.493 kb on + strand, within BWI76_RS09500at 1990.229 kb on + strand, within BWI76_RS09505at 1990.365 kb on + strand, within BWI76_RS09505at 1990.365 kb on + strand, within BWI76_RS09505

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,989,346 + BWI76_RS09500 0.57 -0.5
1,989,354 - +2.2
1,989,493 + BWI76_RS09500 0.77 -0.1
1,990,229 + BWI76_RS09505 0.59 +0.1
1,990,365 + BWI76_RS09505 0.79 +1.5
1,990,365 + BWI76_RS09505 0.79 +0.1

Or see this region's nucleotide sequence