Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09305

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09285 and BWI76_RS09290 overlap by 1 nucleotidesBWI76_RS09290 and BWI76_RS09295 are separated by 3 nucleotidesBWI76_RS09295 and BWI76_RS09300 overlap by 20 nucleotidesBWI76_RS09300 and BWI76_RS09305 are separated by 4 nucleotidesBWI76_RS09305 and BWI76_RS09310 overlap by 4 nucleotidesBWI76_RS09310 and BWI76_RS09315 overlap by 71 nucleotidesBWI76_RS09315 and BWI76_RS09320 overlap by 38 nucleotidesBWI76_RS09320 and BWI76_RS09325 overlap by 8 nucleotides BWI76_RS09285: BWI76_RS09285 - hypothetical protein, at 1,955,711 to 1,956,175 _RS09285 BWI76_RS09290: BWI76_RS09290 - phage Tail Protein X, at 1,956,175 to 1,956,378 _RS09290 BWI76_RS09295: BWI76_RS09295 - hypothetical protein, at 1,956,382 to 1,956,597 _RS09295 BWI76_RS09300: BWI76_RS09300 - phage lysozyme, at 1,956,578 to 1,957,087 _RS09300 BWI76_RS09305: BWI76_RS09305 - hypothetical protein, at 1,957,092 to 1,957,475 _RS09305 BWI76_RS09310: BWI76_RS09310 - hypothetical protein, at 1,957,472 to 1,957,900 _RS09310 BWI76_RS09315: BWI76_RS09315 - hypothetical protein, at 1,957,830 to 1,958,033 _RS09315 BWI76_RS09320: BWI76_RS09320 - P2 phage tail completion protein R, at 1,957,996 to 1,958,427 _RS09320 BWI76_RS09325: BWI76_RS09325 - putative bacteriophage tail completion protein, at 1,958,420 to 1,958,866 _RS09325 Position (kb) 1957 1958Strain fitness (log2 ratio) -1 0 1at 1956.256 kb on - strand, within BWI76_RS09290at 1956.335 kb on - strand, within BWI76_RS09290at 1956.443 kb on - strand, within BWI76_RS09295at 1956.467 kb on + strand, within BWI76_RS09295at 1956.467 kb on + strand, within BWI76_RS09295at 1956.486 kb on + strand, within BWI76_RS09295at 1956.656 kb on + strand, within BWI76_RS09300at 1956.860 kb on + strand, within BWI76_RS09300at 1956.865 kb on + strand, within BWI76_RS09300at 1956.866 kb on - strand, within BWI76_RS09300at 1956.868 kb on - strand, within BWI76_RS09300at 1956.995 kb on - strand, within BWI76_RS09300at 1957.127 kb on + strandat 1957.194 kb on + strand, within BWI76_RS09305at 1957.207 kb on - strand, within BWI76_RS09305at 1957.282 kb on + strand, within BWI76_RS09305at 1957.650 kb on - strand, within BWI76_RS09310at 1957.728 kb on - strand, within BWI76_RS09310at 1957.922 kb on + strand, within BWI76_RS09315at 1957.928 kb on + strand, within BWI76_RS09315at 1958.005 kb on + strandat 1958.055 kb on - strand, within BWI76_RS09320at 1958.123 kb on + strand, within BWI76_RS09320at 1958.129 kb on - strand, within BWI76_RS09320at 1958.149 kb on - strand, within BWI76_RS09320at 1958.240 kb on + strand, within BWI76_RS09320at 1958.316 kb on - strand, within BWI76_RS09320at 1958.364 kb on - strand, within BWI76_RS09320at 1958.446 kb on - strandat 1958.469 kb on + strand, within BWI76_RS09325

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,956,256 - BWI76_RS09290 0.40 -0.8
1,956,335 - BWI76_RS09290 0.78 -0.3
1,956,443 - BWI76_RS09295 0.28 -0.4
1,956,467 + BWI76_RS09295 0.39 -0.4
1,956,467 + BWI76_RS09295 0.39 -0.1
1,956,486 + BWI76_RS09295 0.48 +0.7
1,956,656 + BWI76_RS09300 0.15 +0.1
1,956,860 + BWI76_RS09300 0.55 -0.3
1,956,865 + BWI76_RS09300 0.56 +0.2
1,956,866 - BWI76_RS09300 0.56 +0.4
1,956,868 - BWI76_RS09300 0.57 -0.1
1,956,995 - BWI76_RS09300 0.82 -0.3
1,957,127 + -0.4
1,957,194 + BWI76_RS09305 0.27 +1.2
1,957,207 - BWI76_RS09305 0.30 -0.7
1,957,282 + BWI76_RS09305 0.49 +0.1
1,957,650 - BWI76_RS09310 0.41 -0.0
1,957,728 - BWI76_RS09310 0.60 -0.2
1,957,922 + BWI76_RS09315 0.45 -0.8
1,957,928 + BWI76_RS09315 0.48 +0.1
1,958,005 + -0.2
1,958,055 - BWI76_RS09320 0.14 +0.4
1,958,123 + BWI76_RS09320 0.29 +1.0
1,958,129 - BWI76_RS09320 0.31 -0.2
1,958,149 - BWI76_RS09320 0.35 -0.3
1,958,240 + BWI76_RS09320 0.56 +1.2
1,958,316 - BWI76_RS09320 0.74 -0.3
1,958,364 - BWI76_RS09320 0.85 -0.5
1,958,446 - +0.4
1,958,469 + BWI76_RS09325 0.11 -1.7

Or see this region's nucleotide sequence