Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09130

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09125 and BWI76_RS09130 are separated by 376 nucleotidesBWI76_RS09130 and BWI76_RS09135 are separated by 104 nucleotides BWI76_RS09125: BWI76_RS09125 - MFS transporter, at 1,927,852 to 1,929,096 _RS09125 BWI76_RS09130: BWI76_RS09130 - biofilm formation regulatory protein BssR, at 1,929,473 to 1,929,856 _RS09130 BWI76_RS09135: BWI76_RS09135 - oxidoreductase, at 1,929,961 to 1,931,073 _RS09135 Position (kb) 1929 1930Strain fitness (log2 ratio) -1 0 1at 1928.477 kb on - strand, within BWI76_RS09125at 1928.477 kb on - strand, within BWI76_RS09125at 1928.477 kb on - strand, within BWI76_RS09125at 1928.541 kb on + strand, within BWI76_RS09125at 1928.541 kb on + strand, within BWI76_RS09125at 1928.549 kb on - strand, within BWI76_RS09125at 1928.549 kb on - strand, within BWI76_RS09125at 1928.549 kb on - strand, within BWI76_RS09125at 1928.591 kb on - strand, within BWI76_RS09125at 1928.765 kb on - strand, within BWI76_RS09125at 1928.799 kb on - strand, within BWI76_RS09125at 1928.845 kb on - strand, within BWI76_RS09125at 1928.948 kb on + strand, within BWI76_RS09125at 1928.953 kb on + strand, within BWI76_RS09125at 1929.039 kb on - strandat 1929.105 kb on + strandat 1929.126 kb on - strandat 1929.476 kb on + strandat 1929.495 kb on - strandat 1929.619 kb on + strand, within BWI76_RS09130at 1929.740 kb on + strand, within BWI76_RS09130at 1929.748 kb on - strand, within BWI76_RS09130at 1929.929 kb on - strandat 1930.520 kb on - strand, within BWI76_RS09135at 1930.603 kb on + strand, within BWI76_RS09135at 1930.603 kb on + strand, within BWI76_RS09135at 1930.611 kb on - strand, within BWI76_RS09135at 1930.730 kb on + strand, within BWI76_RS09135

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
1,928,477 - BWI76_RS09125 0.50 -0.1
1,928,477 - BWI76_RS09125 0.50 +0.4
1,928,477 - BWI76_RS09125 0.50 -1.0
1,928,541 + BWI76_RS09125 0.55 -0.5
1,928,541 + BWI76_RS09125 0.55 -0.3
1,928,549 - BWI76_RS09125 0.56 -0.7
1,928,549 - BWI76_RS09125 0.56 +0.3
1,928,549 - BWI76_RS09125 0.56 +0.0
1,928,591 - BWI76_RS09125 0.59 -0.1
1,928,765 - BWI76_RS09125 0.73 -0.0
1,928,799 - BWI76_RS09125 0.76 +1.4
1,928,845 - BWI76_RS09125 0.80 -0.1
1,928,948 + BWI76_RS09125 0.88 -0.6
1,928,953 + BWI76_RS09125 0.88 -0.0
1,929,039 - -0.1
1,929,105 + +0.0
1,929,126 - -0.3
1,929,476 + -0.6
1,929,495 - -1.3
1,929,619 + BWI76_RS09130 0.38 +0.2
1,929,740 + BWI76_RS09130 0.70 +0.2
1,929,748 - BWI76_RS09130 0.72 +0.2
1,929,929 - -0.1
1,930,520 - BWI76_RS09135 0.50 +0.3
1,930,603 + BWI76_RS09135 0.58 -0.3
1,930,603 + BWI76_RS09135 0.58 -0.8
1,930,611 - BWI76_RS09135 0.58 +0.7
1,930,730 + BWI76_RS09135 0.69 -0.6

Or see this region's nucleotide sequence