Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07645

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07640 and BWI76_RS07645 are separated by 199 nucleotidesBWI76_RS07645 and BWI76_RS07650 are separated by 60 nucleotides BWI76_RS07640: BWI76_RS07640 - short chain dehydrogenase, at 1,617,945 to 1,618,730 _RS07640 BWI76_RS07645: BWI76_RS07645 - short-chain dehydrogenase/reductase, at 1,618,930 to 1,619,727 _RS07645 BWI76_RS07650: BWI76_RS07650 - ABC transporter permease, at 1,619,788 to 1,620,843 _RS07650 Position (kb) 1618 1619 1620Strain fitness (log2 ratio) -1 0 1at 1618.235 kb on - strand, within BWI76_RS07640at 1618.235 kb on - strand, within BWI76_RS07640at 1618.272 kb on + strand, within BWI76_RS07640at 1618.777 kb on - strandat 1619.180 kb on - strand, within BWI76_RS07645at 1619.468 kb on - strand, within BWI76_RS07645at 1619.745 kb on - strandat 1619.828 kb on - strandat 1619.838 kb on + strandat 1620.092 kb on + strand, within BWI76_RS07650at 1620.368 kb on + strand, within BWI76_RS07650at 1620.376 kb on - strand, within BWI76_RS07650at 1620.667 kb on - strand, within BWI76_RS07650at 1620.726 kb on + strand, within BWI76_RS07650

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,618,235 - BWI76_RS07640 0.37 +0.3
1,618,235 - BWI76_RS07640 0.37 -0.4
1,618,272 + BWI76_RS07640 0.42 -0.7
1,618,777 - +0.1
1,619,180 - BWI76_RS07645 0.31 +0.3
1,619,468 - BWI76_RS07645 0.67 +1.0
1,619,745 - +0.1
1,619,828 - -0.5
1,619,838 + -0.3
1,620,092 + BWI76_RS07650 0.29 -0.0
1,620,368 + BWI76_RS07650 0.55 -0.1
1,620,376 - BWI76_RS07650 0.56 +0.3
1,620,667 - BWI76_RS07650 0.83 -0.7
1,620,726 + BWI76_RS07650 0.89 -0.3

Or see this region's nucleotide sequence