Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06325

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06320 and BWI76_RS06325 are separated by 64 nucleotidesBWI76_RS06325 and BWI76_RS06330 are separated by 148 nucleotidesBWI76_RS06330 and BWI76_RS06335 are separated by 45 nucleotides BWI76_RS06320: BWI76_RS06320 - Xaa-Pro aminopeptidase, at 1,330,591 to 1,331,982 _RS06320 BWI76_RS06325: BWI76_RS06325 - hypothetical protein, at 1,332,047 to 1,332,424 _RS06325 BWI76_RS06330: BWI76_RS06330 - DNA-binding transcriptional regulator, at 1,332,573 to 1,333,262 _RS06330 BWI76_RS06335: BWI76_RS06335 - nucleoside-specific channel-forming protein Tsx, at 1,333,308 to 1,334,192 _RS06335 Position (kb) 1332 1333Strain fitness (log2 ratio) -1 0 1at 1331.238 kb on + strand, within BWI76_RS06320at 1331.246 kb on + strand, within BWI76_RS06320at 1331.734 kb on + strand, within BWI76_RS06320at 1331.830 kb on - strand, within BWI76_RS06320at 1331.994 kb on + strandat 1332.002 kb on - strandat 1332.004 kb on + strandat 1332.004 kb on + strandat 1332.012 kb on - strandat 1332.012 kb on - strandat 1332.064 kb on - strandat 1332.064 kb on - strandat 1332.083 kb on + strandat 1332.223 kb on + strand, within BWI76_RS06325at 1332.231 kb on + strand, within BWI76_RS06325at 1332.231 kb on - strand, within BWI76_RS06325at 1332.762 kb on + strand, within BWI76_RS06330at 1332.953 kb on + strand, within BWI76_RS06330at 1333.131 kb on - strand, within BWI76_RS06330at 1333.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,331,238 + BWI76_RS06320 0.46 -0.1
1,331,246 + BWI76_RS06320 0.47 +0.9
1,331,734 + BWI76_RS06320 0.82 +0.9
1,331,830 - BWI76_RS06320 0.89 -0.1
1,331,994 + -0.6
1,332,002 - -0.1
1,332,004 + -0.1
1,332,004 + -0.2
1,332,012 - -0.2
1,332,012 - -0.6
1,332,064 - +0.1
1,332,064 - -0.2
1,332,083 + -0.3
1,332,223 + BWI76_RS06325 0.47 +0.1
1,332,231 + BWI76_RS06325 0.49 +0.6
1,332,231 - BWI76_RS06325 0.49 +0.8
1,332,762 + BWI76_RS06330 0.27 -1.4
1,332,953 + BWI76_RS06330 0.55 +0.1
1,333,131 - BWI76_RS06330 0.81 -0.5
1,333,395 + +0.2

Or see this region's nucleotide sequence