Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05500

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05495 and BWI76_RS05500 overlap by 8 nucleotidesBWI76_RS05500 and BWI76_RS05505 overlap by 8 nucleotidesBWI76_RS05505 and BWI76_RS05510 are separated by 6 nucleotides BWI76_RS05495: BWI76_RS05495 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 1,153,181 to 1,154,419 _RS05495 BWI76_RS05500: BWI76_RS05500 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 1,154,412 to 1,155,206 _RS05500 BWI76_RS05505: BWI76_RS05505 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 1,155,199 to 1,155,837 _RS05505 BWI76_RS05510: BWI76_RS05510 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 1,155,844 to 1,156,440 _RS05510 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -1 0 1at 1153.491 kb on - strand, within BWI76_RS05495at 1153.548 kb on + strand, within BWI76_RS05495at 1153.574 kb on + strand, within BWI76_RS05495at 1153.582 kb on - strand, within BWI76_RS05495at 1153.665 kb on + strand, within BWI76_RS05495at 1153.673 kb on - strand, within BWI76_RS05495at 1153.852 kb on + strand, within BWI76_RS05495at 1154.081 kb on + strand, within BWI76_RS05495at 1154.702 kb on + strand, within BWI76_RS05500at 1154.739 kb on - strand, within BWI76_RS05500at 1154.809 kb on + strand, within BWI76_RS05500at 1154.954 kb on + strand, within BWI76_RS05500at 1155.068 kb on + strand, within BWI76_RS05500at 1155.074 kb on - strand, within BWI76_RS05500at 1155.089 kb on + strand, within BWI76_RS05500at 1155.862 kb on - strandat 1156.033 kb on - strand, within BWI76_RS05510at 1156.158 kb on + strand, within BWI76_RS05510at 1156.158 kb on + strand, within BWI76_RS05510at 1156.166 kb on - strand, within BWI76_RS05510

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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1,153,491 - BWI76_RS05495 0.25 -0.1
1,153,548 + BWI76_RS05495 0.30 -0.7
1,153,574 + BWI76_RS05495 0.32 -0.1
1,153,582 - BWI76_RS05495 0.32 +0.2
1,153,665 + BWI76_RS05495 0.39 -0.2
1,153,673 - BWI76_RS05495 0.40 -1.0
1,153,852 + BWI76_RS05495 0.54 -0.1
1,154,081 + BWI76_RS05495 0.73 +0.0
1,154,702 + BWI76_RS05500 0.36 +0.3
1,154,739 - BWI76_RS05500 0.41 +1.2
1,154,809 + BWI76_RS05500 0.50 -0.5
1,154,954 + BWI76_RS05500 0.68 +0.2
1,155,068 + BWI76_RS05500 0.83 -0.1
1,155,074 - BWI76_RS05500 0.83 +0.2
1,155,089 + BWI76_RS05500 0.85 +0.6
1,155,862 - +0.5
1,156,033 - BWI76_RS05510 0.32 -0.1
1,156,158 + BWI76_RS05510 0.53 +0.3
1,156,158 + BWI76_RS05510 0.53 -0.3
1,156,166 - BWI76_RS05510 0.54 +1.7

Or see this region's nucleotide sequence