Experiment: RCH2_defined_glucose with MS_media 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05495 and BWI76_RS05500 overlap by 8 nucleotides BWI76_RS05500 and BWI76_RS05505 overlap by 8 nucleotides BWI76_RS05505 and BWI76_RS05510 are separated by 6 nucleotides
BWI76_RS05495: BWI76_RS05495 - NADH:ubiquinone reductase (Na(+)-transporting) subunit B, at 1,153,181 to 1,154,419
_RS05495
BWI76_RS05500: BWI76_RS05500 - NADH:ubiquinone reductase (Na(+)-transporting) subunit C, at 1,154,412 to 1,155,206
_RS05500
BWI76_RS05505: BWI76_RS05505 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 1,155,199 to 1,155,837
_RS05505
BWI76_RS05510: BWI76_RS05510 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 1,155,844 to 1,156,440
_RS05510
Position (kb)
1154
1155
1156 Strain fitness (log2 ratio)
-1
0
1 at 1153.491 kb on - strand, within BWI76_RS05495 at 1153.548 kb on + strand, within BWI76_RS05495 at 1153.574 kb on + strand, within BWI76_RS05495 at 1153.582 kb on - strand, within BWI76_RS05495 at 1153.665 kb on + strand, within BWI76_RS05495 at 1153.673 kb on - strand, within BWI76_RS05495 at 1153.852 kb on + strand, within BWI76_RS05495 at 1154.081 kb on + strand, within BWI76_RS05495 at 1154.702 kb on + strand, within BWI76_RS05500 at 1154.739 kb on - strand, within BWI76_RS05500 at 1154.809 kb on + strand, within BWI76_RS05500 at 1154.954 kb on + strand, within BWI76_RS05500 at 1155.068 kb on + strand, within BWI76_RS05500 at 1155.074 kb on - strand, within BWI76_RS05500 at 1155.089 kb on + strand, within BWI76_RS05500 at 1155.862 kb on - strand at 1156.033 kb on - strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.158 kb on + strand, within BWI76_RS05510 at 1156.166 kb on - strand, within BWI76_RS05510
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x remove 1,153,491 - BWI76_RS05495 0.25 -0.1 1,153,548 + BWI76_RS05495 0.30 -0.7 1,153,574 + BWI76_RS05495 0.32 -0.1 1,153,582 - BWI76_RS05495 0.32 +0.2 1,153,665 + BWI76_RS05495 0.39 -0.2 1,153,673 - BWI76_RS05495 0.40 -1.0 1,153,852 + BWI76_RS05495 0.54 -0.1 1,154,081 + BWI76_RS05495 0.73 +0.0 1,154,702 + BWI76_RS05500 0.36 +0.3 1,154,739 - BWI76_RS05500 0.41 +1.2 1,154,809 + BWI76_RS05500 0.50 -0.5 1,154,954 + BWI76_RS05500 0.68 +0.2 1,155,068 + BWI76_RS05500 0.83 -0.1 1,155,074 - BWI76_RS05500 0.83 +0.2 1,155,089 + BWI76_RS05500 0.85 +0.6 1,155,862 - +0.5 1,156,033 - BWI76_RS05510 0.32 -0.1 1,156,158 + BWI76_RS05510 0.53 +0.3 1,156,158 + BWI76_RS05510 0.53 -0.3 1,156,166 - BWI76_RS05510 0.54 +1.7
Or see this region's nucleotide sequence