Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01800

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01790 and BWI76_RS01795 are separated by 121 nucleotidesBWI76_RS01795 and BWI76_RS01800 are separated by 282 nucleotidesBWI76_RS01800 and BWI76_RS01805 are separated by 45 nucleotidesBWI76_RS01805 and BWI76_RS01810 are separated by 8 nucleotides BWI76_RS01790: BWI76_RS01790 - lysine-sensitive aspartokinase 3, at 365,131 to 366,480 _RS01790 BWI76_RS01795: BWI76_RS01795 - hypothetical protein, at 366,602 to 366,964 _RS01795 BWI76_RS01800: BWI76_RS01800 - glucose-6-phosphate isomerase, at 367,247 to 368,896 _RS01800 BWI76_RS01805: BWI76_RS01805 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 368,942 to 369,397 _RS01805 BWI76_RS01810: BWI76_RS01810 - N-acetyltransferase, at 369,406 to 369,915 _RS01810 Position (kb) 367 368 369Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 366.253 kb on + strand, within BWI76_RS01790at 366.418 kb on + strandat 366.663 kb on + strand, within BWI76_RS01795at 366.681 kb on + strand, within BWI76_RS01795at 366.801 kb on + strand, within BWI76_RS01795at 366.931 kb on + strandat 366.938 kb on - strandat 366.990 kb on - strandat 367.238 kb on + strandat 367.265 kb on + strandat 367.443 kb on - strand, within BWI76_RS01800at 367.532 kb on + strand, within BWI76_RS01800at 367.566 kb on - strand, within BWI76_RS01800at 367.772 kb on - strand, within BWI76_RS01800at 368.147 kb on + strand, within BWI76_RS01800at 368.527 kb on + strand, within BWI76_RS01800at 368.604 kb on + strand, within BWI76_RS01800at 368.758 kb on - strandat 368.765 kb on - strandat 368.862 kb on + strandat 368.899 kb on + strandat 369.126 kb on + strand, within BWI76_RS01805at 369.134 kb on - strand, within BWI76_RS01805at 369.314 kb on + strand, within BWI76_RS01805at 369.322 kb on + strand, within BWI76_RS01805at 369.388 kb on + strandat 369.388 kb on + strandat 369.388 kb on + strandat 369.503 kb on - strand, within BWI76_RS01810at 369.569 kb on - strand, within BWI76_RS01810at 369.599 kb on + strand, within BWI76_RS01810at 369.637 kb on - strand, within BWI76_RS01810at 369.689 kb on - strand, within BWI76_RS01810at 369.809 kb on - strand, within BWI76_RS01810at 369.841 kb on - strand, within BWI76_RS01810at 369.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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366,253 + BWI76_RS01790 0.83 +0.3
366,418 + -0.2
366,663 + BWI76_RS01795 0.17 -0.2
366,681 + BWI76_RS01795 0.22 -0.0
366,801 + BWI76_RS01795 0.55 -0.4
366,931 + -0.0
366,938 - +0.1
366,990 - -0.5
367,238 + +0.2
367,265 + -4.6
367,443 - BWI76_RS01800 0.12 -1.1
367,532 + BWI76_RS01800 0.17 -2.6
367,566 - BWI76_RS01800 0.19 -2.0
367,772 - BWI76_RS01800 0.32 -4.3
368,147 + BWI76_RS01800 0.55 -2.9
368,527 + BWI76_RS01800 0.78 -4.8
368,604 + BWI76_RS01800 0.82 -3.8
368,758 - +0.2
368,765 - -2.2
368,862 + -2.0
368,899 + -0.1
369,126 + BWI76_RS01805 0.40 -0.1
369,134 - BWI76_RS01805 0.42 +0.4
369,314 + BWI76_RS01805 0.82 -0.4
369,322 + BWI76_RS01805 0.83 -0.2
369,388 + -0.8
369,388 + +0.1
369,388 + -0.4
369,503 - BWI76_RS01810 0.19 +0.1
369,569 - BWI76_RS01810 0.32 -0.1
369,599 + BWI76_RS01810 0.38 -0.4
369,637 - BWI76_RS01810 0.45 -0.2
369,689 - BWI76_RS01810 0.55 -0.2
369,809 - BWI76_RS01810 0.79 -0.3
369,841 - BWI76_RS01810 0.85 -0.1
369,884 - -0.5

Or see this region's nucleotide sequence