Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00355

Experiment: RCH2_defined_glucose with MS_media 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS00350 and BWI76_RS00355 are separated by 396 nucleotidesBWI76_RS00355 and BWI76_RS00360 are separated by 139 nucleotidesBWI76_RS00360 and BWI76_RS00365 are separated by 28 nucleotides BWI76_RS00350: BWI76_RS00350 - acyltransferase, at 72,900 to 73,799 _RS00350 BWI76_RS00355: BWI76_RS00355 - DNA polymerase I, at 74,196 to 76,985 _RS00355 BWI76_RS00360: BWI76_RS00360 - hypothetical protein, at 77,125 to 77,306 _RS00360 BWI76_RS00365: BWI76_RS00365 - YihA family ribosome biogenesis GTP-binding protein, at 77,335 to 77,967 _RS00365 Position (kb) 74 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 73.221 kb on + strand, within BWI76_RS00350at 73.238 kb on + strand, within BWI76_RS00350at 73.250 kb on - strand, within BWI76_RS00350at 73.255 kb on + strand, within BWI76_RS00350at 73.256 kb on - strand, within BWI76_RS00350at 73.274 kb on - strand, within BWI76_RS00350at 73.274 kb on - strand, within BWI76_RS00350at 73.279 kb on - strand, within BWI76_RS00350at 73.286 kb on - strand, within BWI76_RS00350at 73.317 kb on + strand, within BWI76_RS00350at 73.340 kb on + strand, within BWI76_RS00350at 73.348 kb on - strand, within BWI76_RS00350at 73.392 kb on + strand, within BWI76_RS00350at 73.474 kb on - strand, within BWI76_RS00350at 73.491 kb on + strand, within BWI76_RS00350at 73.491 kb on + strand, within BWI76_RS00350at 73.499 kb on - strand, within BWI76_RS00350at 73.501 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.521 kb on - strand, within BWI76_RS00350at 73.566 kb on + strand, within BWI76_RS00350at 73.566 kb on + strand, within BWI76_RS00350at 73.574 kb on - strand, within BWI76_RS00350at 73.580 kb on + strand, within BWI76_RS00350at 73.588 kb on - strand, within BWI76_RS00350at 73.599 kb on - strand, within BWI76_RS00350at 73.600 kb on - strand, within BWI76_RS00350at 73.610 kb on - strand, within BWI76_RS00350at 73.619 kb on - strandat 73.625 kb on - strand, within BWI76_RS00350at 73.627 kb on - strand, within BWI76_RS00350at 73.703 kb on + strand, within BWI76_RS00350at 73.754 kb on + strandat 73.754 kb on + strandat 73.762 kb on - strandat 73.824 kb on - strandat 73.837 kb on + strandat 73.837 kb on + strandat 73.845 kb on - strandat 73.845 kb on - strandat 73.918 kb on + strandat 73.926 kb on - strandat 73.944 kb on + strandat 73.962 kb on - strandat 74.072 kb on + strandat 74.080 kb on - strandat 74.080 kb on - strandat 74.091 kb on + strandat 75.445 kb on + strand, within BWI76_RS00355at 76.113 kb on + strand, within BWI76_RS00355at 76.465 kb on + strand, within BWI76_RS00355at 77.143 kb on + strandat 77.308 kb on - strandat 77.380 kb on - strandat 77.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
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73,221 + BWI76_RS00350 0.36 -0.2
73,238 + BWI76_RS00350 0.38 -0.3
73,250 - BWI76_RS00350 0.39 -0.1
73,255 + BWI76_RS00350 0.39 +0.0
73,256 - BWI76_RS00350 0.40 +0.2
73,274 - BWI76_RS00350 0.42 +0.2
73,274 - BWI76_RS00350 0.42 -0.5
73,279 - BWI76_RS00350 0.42 -0.1
73,286 - BWI76_RS00350 0.43 +0.8
73,317 + BWI76_RS00350 0.46 -0.9
73,340 + BWI76_RS00350 0.49 -0.1
73,348 - BWI76_RS00350 0.50 +0.0
73,392 + BWI76_RS00350 0.55 +0.3
73,474 - BWI76_RS00350 0.64 +0.2
73,491 + BWI76_RS00350 0.66 -0.3
73,491 + BWI76_RS00350 0.66 -1.3
73,499 - BWI76_RS00350 0.67 +0.2
73,501 - BWI76_RS00350 0.67 -0.4
73,520 - BWI76_RS00350 0.69 -0.1
73,520 - BWI76_RS00350 0.69 +0.2
73,520 - BWI76_RS00350 0.69 -0.2
73,521 - BWI76_RS00350 0.69 +0.2
73,566 + BWI76_RS00350 0.74 -0.7
73,566 + BWI76_RS00350 0.74 +0.2
73,574 - BWI76_RS00350 0.75 +0.2
73,580 + BWI76_RS00350 0.76 +0.1
73,588 - BWI76_RS00350 0.76 -1.1
73,599 - BWI76_RS00350 0.78 +0.0
73,600 - BWI76_RS00350 0.78 +0.1
73,610 - BWI76_RS00350 0.79 -0.9
73,619 - +0.7
73,625 - BWI76_RS00350 0.81 -0.3
73,627 - BWI76_RS00350 0.81 +0.3
73,703 + BWI76_RS00350 0.89 +1.2
73,754 + +0.1
73,754 + -0.6
73,762 - -1.1
73,824 - -0.2
73,837 + -0.5
73,837 + -0.3
73,845 - -0.0
73,845 - -0.0
73,918 + +0.7
73,926 - -0.4
73,944 + +0.4
73,962 - +0.3
74,072 + +2.4
74,080 - -0.0
74,080 - -0.7
74,091 + -1.9
75,445 + BWI76_RS00355 0.45 +0.0
76,113 + BWI76_RS00355 0.69 -1.3
76,465 + BWI76_RS00355 0.81 -1.2
77,143 + +0.2
77,308 - -0.2
77,380 - -0.5
77,381 - -0.5

Or see this region's nucleotide sequence