Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS00345

Experiment: RCH2_defined_glucose with MS_media 0.5x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS00340 and BWI76_RS00345 are separated by 27 nucleotidesBWI76_RS00345 and BWI76_RS00350 are separated by 49 nucleotides BWI76_RS00340: BWI76_RS00340 - stress response kinase A, at 71,213 to 72,199 _RS00340 BWI76_RS00345: BWI76_RS00345 - protein disulfide oxidoreductase DsbA, at 72,227 to 72,850 _RS00345 BWI76_RS00350: BWI76_RS00350 - acyltransferase, at 72,900 to 73,799 _RS00350 Position (kb) 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1at 71.232 kb on - strandat 71.303 kb on - strandat 71.317 kb on - strand, within BWI76_RS00340at 71.529 kb on + strand, within BWI76_RS00340at 71.637 kb on - strand, within BWI76_RS00340at 72.120 kb on + strandat 72.151 kb on + strandat 72.151 kb on + strandat 72.151 kb on + strandat 72.151 kb on + strandat 72.151 kb on + strandat 72.158 kb on + strandat 72.159 kb on - strandat 72.159 kb on - strandat 72.159 kb on - strandat 72.159 kb on - strandat 72.159 kb on - strandat 72.201 kb on - strandat 72.307 kb on + strand, within BWI76_RS00345at 72.339 kb on + strand, within BWI76_RS00345at 72.510 kb on - strand, within BWI76_RS00345at 72.510 kb on - strand, within BWI76_RS00345at 72.592 kb on - strand, within BWI76_RS00345at 72.592 kb on - strand, within BWI76_RS00345at 72.661 kb on - strand, within BWI76_RS00345at 72.745 kb on - strand, within BWI76_RS00345at 72.822 kb on + strandat 72.830 kb on - strandat 72.832 kb on - strandat 72.875 kb on + strandat 72.875 kb on + strandat 72.875 kb on + strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.883 kb on - strandat 72.959 kb on + strandat 72.959 kb on + strandat 72.967 kb on - strandat 73.004 kb on + strand, within BWI76_RS00350at 73.019 kb on + strand, within BWI76_RS00350at 73.034 kb on - strandat 73.047 kb on + strand, within BWI76_RS00350at 73.047 kb on - strand, within BWI76_RS00350at 73.111 kb on + strand, within BWI76_RS00350at 73.111 kb on + strand, within BWI76_RS00350at 73.111 kb on + strand, within BWI76_RS00350at 73.111 kb on + strand, within BWI76_RS00350at 73.121 kb on + strand, within BWI76_RS00350at 73.129 kb on - strand, within BWI76_RS00350at 73.129 kb on - strand, within BWI76_RS00350at 73.129 kb on - strand, within BWI76_RS00350at 73.136 kb on + strand, within BWI76_RS00350at 73.152 kb on + strand, within BWI76_RS00350at 73.169 kb on - strand, within BWI76_RS00350at 73.221 kb on + strand, within BWI76_RS00350at 73.238 kb on + strand, within BWI76_RS00350at 73.250 kb on - strand, within BWI76_RS00350at 73.255 kb on + strand, within BWI76_RS00350at 73.256 kb on - strand, within BWI76_RS00350at 73.274 kb on - strand, within BWI76_RS00350at 73.274 kb on - strand, within BWI76_RS00350at 73.279 kb on - strand, within BWI76_RS00350at 73.286 kb on - strand, within BWI76_RS00350at 73.317 kb on + strand, within BWI76_RS00350at 73.340 kb on + strand, within BWI76_RS00350at 73.348 kb on - strand, within BWI76_RS00350at 73.392 kb on + strand, within BWI76_RS00350at 73.474 kb on - strand, within BWI76_RS00350at 73.491 kb on + strand, within BWI76_RS00350at 73.491 kb on + strand, within BWI76_RS00350at 73.499 kb on - strand, within BWI76_RS00350at 73.501 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.520 kb on - strand, within BWI76_RS00350at 73.521 kb on - strand, within BWI76_RS00350at 73.566 kb on + strand, within BWI76_RS00350at 73.566 kb on + strand, within BWI76_RS00350at 73.574 kb on - strand, within BWI76_RS00350at 73.580 kb on + strand, within BWI76_RS00350at 73.588 kb on - strand, within BWI76_RS00350at 73.599 kb on - strand, within BWI76_RS00350at 73.600 kb on - strand, within BWI76_RS00350at 73.610 kb on - strand, within BWI76_RS00350at 73.619 kb on - strandat 73.625 kb on - strand, within BWI76_RS00350at 73.627 kb on - strand, within BWI76_RS00350at 73.703 kb on + strand, within BWI76_RS00350at 73.754 kb on + strandat 73.754 kb on + strandat 73.762 kb on - strandat 73.824 kb on - strandat 73.837 kb on + strandat 73.837 kb on + strandat 73.845 kb on - strandat 73.845 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 0.5x
remove
71,232 - -0.5
71,303 - +0.2
71,317 - BWI76_RS00340 0.11 -0.0
71,529 + BWI76_RS00340 0.32 -0.3
71,637 - BWI76_RS00340 0.43 -0.1
72,120 + -0.3
72,151 + -0.3
72,151 + -0.5
72,151 + -0.5
72,151 + -0.7
72,151 + -0.5
72,158 + +0.4
72,159 - -1.7
72,159 - -3.6
72,159 - -1.4
72,159 - +0.7
72,159 - -1.1
72,201 - -1.1
72,307 + BWI76_RS00345 0.13 -1.5
72,339 + BWI76_RS00345 0.18 -1.2
72,510 - BWI76_RS00345 0.45 +0.2
72,510 - BWI76_RS00345 0.45 -1.6
72,592 - BWI76_RS00345 0.58 +0.2
72,592 - BWI76_RS00345 0.58 -0.7
72,661 - BWI76_RS00345 0.70 -1.7
72,745 - BWI76_RS00345 0.83 -0.5
72,822 + -1.9
72,830 - -0.9
72,832 - -0.6
72,875 + -0.2
72,875 + +0.1
72,875 + +0.1
72,883 - -0.2
72,883 - -0.4
72,883 - -0.6
72,959 + -0.7
72,959 + -0.5
72,967 - -0.0
73,004 + BWI76_RS00350 0.12 -0.1
73,019 + BWI76_RS00350 0.13 +0.0
73,034 - -0.7
73,047 + BWI76_RS00350 0.16 +0.0
73,047 - BWI76_RS00350 0.16 +0.0
73,111 + BWI76_RS00350 0.23 -0.4
73,111 + BWI76_RS00350 0.23 -0.5
73,111 + BWI76_RS00350 0.23 -0.7
73,111 + BWI76_RS00350 0.23 +0.5
73,121 + BWI76_RS00350 0.25 +0.3
73,129 - BWI76_RS00350 0.25 -0.1
73,129 - BWI76_RS00350 0.25 -0.1
73,129 - BWI76_RS00350 0.25 -0.4
73,136 + BWI76_RS00350 0.26 +0.2
73,152 + BWI76_RS00350 0.28 +0.2
73,169 - BWI76_RS00350 0.30 -0.3
73,221 + BWI76_RS00350 0.36 -0.2
73,238 + BWI76_RS00350 0.38 -0.3
73,250 - BWI76_RS00350 0.39 -0.1
73,255 + BWI76_RS00350 0.39 +0.0
73,256 - BWI76_RS00350 0.40 +0.2
73,274 - BWI76_RS00350 0.42 +0.2
73,274 - BWI76_RS00350 0.42 -0.5
73,279 - BWI76_RS00350 0.42 -0.1
73,286 - BWI76_RS00350 0.43 +0.8
73,317 + BWI76_RS00350 0.46 -0.9
73,340 + BWI76_RS00350 0.49 -0.1
73,348 - BWI76_RS00350 0.50 +0.0
73,392 + BWI76_RS00350 0.55 +0.3
73,474 - BWI76_RS00350 0.64 +0.2
73,491 + BWI76_RS00350 0.66 -0.3
73,491 + BWI76_RS00350 0.66 -1.3
73,499 - BWI76_RS00350 0.67 +0.2
73,501 - BWI76_RS00350 0.67 -0.4
73,520 - BWI76_RS00350 0.69 -0.1
73,520 - BWI76_RS00350 0.69 +0.2
73,520 - BWI76_RS00350 0.69 -0.2
73,521 - BWI76_RS00350 0.69 +0.2
73,566 + BWI76_RS00350 0.74 -0.7
73,566 + BWI76_RS00350 0.74 +0.2
73,574 - BWI76_RS00350 0.75 +0.2
73,580 + BWI76_RS00350 0.76 +0.1
73,588 - BWI76_RS00350 0.76 -1.1
73,599 - BWI76_RS00350 0.78 +0.0
73,600 - BWI76_RS00350 0.78 +0.1
73,610 - BWI76_RS00350 0.79 -0.9
73,619 - +0.7
73,625 - BWI76_RS00350 0.81 -0.3
73,627 - BWI76_RS00350 0.81 +0.3
73,703 + BWI76_RS00350 0.89 +1.2
73,754 + +0.1
73,754 + -0.6
73,762 - -1.1
73,824 - -0.2
73,837 + -0.5
73,837 + -0.3
73,845 - -0.0
73,845 - -0.0

Or see this region's nucleotide sequence