Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3295

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3294 and BT3295 are separated by 275 nucleotidesBT3295 and BT3296 are separated by 18 nucleotides BT3294: BT3294 - putative alpha-glucosidase (NCBI ptt file), at 4,219,281 to 4,221,233 BT3294 BT3295: BT3295 - hypothetical protein (NCBI ptt file), at 4,221,509 to 4,222,513 BT3295 BT3296: BT3296 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,222,532 to 4,224,556 BT3296 Position (kb) 4221 4222 4223Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4220.638 kb on - strand, within BT3294at 4220.645 kb on + strand, within BT3294at 4220.655 kb on - strand, within BT3294at 4220.660 kb on + strand, within BT3294at 4220.660 kb on + strand, within BT3294at 4220.660 kb on + strand, within BT3294at 4220.660 kb on + strand, within BT3294at 4220.741 kb on - strand, within BT3294at 4220.783 kb on - strand, within BT3294at 4220.849 kb on + strand, within BT3294at 4220.857 kb on + strand, within BT3294at 4220.897 kb on - strand, within BT3294at 4220.985 kb on + strand, within BT3294at 4221.093 kb on + strandat 4221.100 kb on + strandat 4221.101 kb on - strandat 4221.101 kb on - strandat 4221.157 kb on - strandat 4221.193 kb on - strandat 4221.193 kb on - strandat 4221.204 kb on - strandat 4221.216 kb on + strandat 4221.217 kb on - strandat 4221.217 kb on - strandat 4221.240 kb on - strandat 4221.256 kb on - strandat 4221.301 kb on + strandat 4221.303 kb on + strandat 4221.303 kb on + strandat 4221.323 kb on - strandat 4221.366 kb on + strandat 4221.371 kb on - strandat 4221.371 kb on - strandat 4221.375 kb on + strandat 4221.376 kb on - strandat 4221.389 kb on + strandat 4221.399 kb on + strandat 4221.430 kb on - strandat 4221.431 kb on + strandat 4221.431 kb on + strandat 4221.447 kb on + strandat 4221.494 kb on + strandat 4221.497 kb on - strandat 4221.521 kb on - strandat 4221.539 kb on + strandat 4221.542 kb on + strandat 4221.580 kb on + strandat 4221.589 kb on - strandat 4221.615 kb on - strand, within BT3295at 4221.624 kb on + strand, within BT3295at 4221.624 kb on + strand, within BT3295at 4221.625 kb on - strand, within BT3295at 4221.629 kb on - strand, within BT3295at 4221.629 kb on - strand, within BT3295at 4221.652 kb on - strand, within BT3295at 4221.663 kb on - strand, within BT3295at 4221.663 kb on - strand, within BT3295at 4221.666 kb on + strand, within BT3295at 4221.666 kb on + strand, within BT3295at 4221.712 kb on + strand, within BT3295at 4221.752 kb on + strand, within BT3295at 4221.844 kb on + strand, within BT3295at 4221.845 kb on - strand, within BT3295at 4221.931 kb on + strand, within BT3295at 4221.932 kb on - strand, within BT3295at 4221.982 kb on - strand, within BT3295at 4221.989 kb on - strand, within BT3295at 4221.989 kb on - strand, within BT3295at 4221.989 kb on - strand, within BT3295at 4221.990 kb on + strand, within BT3295at 4221.990 kb on + strand, within BT3295at 4222.016 kb on - strand, within BT3295at 4222.044 kb on + strand, within BT3295at 4222.128 kb on - strand, within BT3295at 4222.155 kb on + strand, within BT3295at 4222.162 kb on + strand, within BT3295at 4222.162 kb on + strand, within BT3295at 4222.162 kb on + strand, within BT3295at 4222.179 kb on + strand, within BT3295at 4222.204 kb on - strand, within BT3295at 4222.208 kb on + strand, within BT3295at 4222.336 kb on - strand, within BT3295at 4222.337 kb on + strand, within BT3295at 4222.364 kb on + strand, within BT3295at 4222.368 kb on + strand, within BT3295at 4222.368 kb on + strand, within BT3295at 4222.368 kb on + strand, within BT3295at 4222.369 kb on - strand, within BT3295at 4222.369 kb on - strand, within BT3295at 4222.369 kb on - strand, within BT3295at 4222.372 kb on + strand, within BT3295at 4222.395 kb on - strand, within BT3295at 4222.418 kb on - strandat 4222.487 kb on - strandat 4222.493 kb on - strandat 4222.533 kb on + strandat 4222.583 kb on + strandat 4222.584 kb on - strandat 4222.662 kb on + strandat 4222.663 kb on - strandat 4222.694 kb on + strandat 4222.694 kb on + strandat 4222.761 kb on + strand, within BT3296at 4222.780 kb on + strand, within BT3296at 4222.781 kb on - strand, within BT3296at 4222.834 kb on + strand, within BT3296at 4222.835 kb on - strand, within BT3296at 4222.837 kb on - strand, within BT3296at 4222.838 kb on + strand, within BT3296at 4222.839 kb on - strand, within BT3296at 4222.851 kb on + strand, within BT3296at 4222.873 kb on + strand, within BT3296at 4222.873 kb on + strand, within BT3296at 4222.922 kb on + strand, within BT3296at 4222.923 kb on - strand, within BT3296at 4222.957 kb on - strand, within BT3296at 4222.957 kb on - strand, within BT3296at 4222.963 kb on + strand, within BT3296at 4222.983 kb on - strand, within BT3296at 4222.996 kb on - strand, within BT3296at 4223.033 kb on + strand, within BT3296at 4223.034 kb on - strand, within BT3296at 4223.038 kb on + strand, within BT3296at 4223.044 kb on - strand, within BT3296at 4223.057 kb on - strand, within BT3296at 4223.063 kb on - strand, within BT3296at 4223.063 kb on - strand, within BT3296at 4223.160 kb on + strand, within BT3296at 4223.176 kb on + strand, within BT3296at 4223.276 kb on + strand, within BT3296at 4223.395 kb on + strand, within BT3296at 4223.401 kb on - strand, within BT3296at 4223.478 kb on + strand, within BT3296

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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4,220,638 - BT3294 0.69 +1.0
4,220,645 + BT3294 0.70 -0.9
4,220,655 - BT3294 0.70 -2.4
4,220,660 + BT3294 0.71 +0.5
4,220,660 + BT3294 0.71 +0.2
4,220,660 + BT3294 0.71 -1.9
4,220,660 + BT3294 0.71 +1.2
4,220,741 - BT3294 0.75 +2.7
4,220,783 - BT3294 0.77 -0.3
4,220,849 + BT3294 0.80 +1.2
4,220,857 + BT3294 0.81 +1.2
4,220,897 - BT3294 0.83 +1.6
4,220,985 + BT3294 0.87 -2.1
4,221,093 + -1.2
4,221,100 + -1.8
4,221,101 - -1.2
4,221,101 - +2.6
4,221,157 - +2.5
4,221,193 - -0.8
4,221,193 - +1.8
4,221,204 - -2.4
4,221,216 + -2.0
4,221,217 - -1.1
4,221,217 - +0.0
4,221,240 - -2.1
4,221,256 - +2.0
4,221,301 + -3.0
4,221,303 + -1.6
4,221,303 + -2.8
4,221,323 - -3.4
4,221,366 + -0.9
4,221,371 - +1.2
4,221,371 - -0.4
4,221,375 + +1.8
4,221,376 - -1.1
4,221,389 + +0.2
4,221,399 + -2.0
4,221,430 - -1.2
4,221,431 + +3.2
4,221,431 + -0.8
4,221,447 + +1.8
4,221,494 + +0.7
4,221,497 - +2.7
4,221,521 - -1.4
4,221,539 + -2.9
4,221,542 + -0.5
4,221,580 + -1.4
4,221,589 - -1.9
4,221,615 - BT3295 0.11 -1.3
4,221,624 + BT3295 0.11 +0.2
4,221,624 + BT3295 0.11 -2.1
4,221,625 - BT3295 0.12 -1.8
4,221,629 - BT3295 0.12 +0.2
4,221,629 - BT3295 0.12 -0.5
4,221,652 - BT3295 0.14 -2.1
4,221,663 - BT3295 0.15 -2.8
4,221,663 - BT3295 0.15 +0.2
4,221,666 + BT3295 0.16 -1.8
4,221,666 + BT3295 0.16 +1.2
4,221,712 + BT3295 0.20 -1.5
4,221,752 + BT3295 0.24 -1.9
4,221,844 + BT3295 0.33 -0.6
4,221,845 - BT3295 0.33 -2.1
4,221,931 + BT3295 0.42 +0.2
4,221,932 - BT3295 0.42 -0.1
4,221,982 - BT3295 0.47 +2.8
4,221,989 - BT3295 0.48 -1.1
4,221,989 - BT3295 0.48 +2.2
4,221,989 - BT3295 0.48 +2.2
4,221,990 + BT3295 0.48 -0.8
4,221,990 + BT3295 0.48 +4.2
4,222,016 - BT3295 0.50 -0.3
4,222,044 + BT3295 0.53 -2.4
4,222,128 - BT3295 0.62 +0.2
4,222,155 + BT3295 0.64 -3.1
4,222,162 + BT3295 0.65 -0.5
4,222,162 + BT3295 0.65 -1.1
4,222,162 + BT3295 0.65 +0.2
4,222,179 + BT3295 0.67 +2.9
4,222,204 - BT3295 0.69 +0.0
4,222,208 + BT3295 0.70 +3.1
4,222,336 - BT3295 0.82 -2.9
4,222,337 + BT3295 0.82 +0.2
4,222,364 + BT3295 0.85 -1.1
4,222,368 + BT3295 0.85 +0.2
4,222,368 + BT3295 0.85 +0.2
4,222,368 + BT3295 0.85 +0.6
4,222,369 - BT3295 0.86 -2.6
4,222,369 - BT3295 0.86 -1.2
4,222,369 - BT3295 0.86 -0.4
4,222,372 + BT3295 0.86 +2.2
4,222,395 - BT3295 0.88 -0.5
4,222,418 - +1.6
4,222,487 - -2.7
4,222,493 - +4.1
4,222,533 + -2.2
4,222,583 + -1.0
4,222,584 - +0.3
4,222,662 + -0.9
4,222,663 - -2.4
4,222,694 + -0.6
4,222,694 + -2.6
4,222,761 + BT3296 0.11 +0.2
4,222,780 + BT3296 0.12 -2.9
4,222,781 - BT3296 0.12 -0.4
4,222,834 + BT3296 0.15 -1.4
4,222,835 - BT3296 0.15 -0.8
4,222,837 - BT3296 0.15 -2.1
4,222,838 + BT3296 0.15 -3.9
4,222,839 - BT3296 0.15 -0.1
4,222,851 + BT3296 0.16 -2.4
4,222,873 + BT3296 0.17 -0.6
4,222,873 + BT3296 0.17 -1.2
4,222,922 + BT3296 0.19 +1.2
4,222,923 - BT3296 0.19 -0.3
4,222,957 - BT3296 0.21 -1.3
4,222,957 - BT3296 0.21 -0.8
4,222,963 + BT3296 0.21 -0.2
4,222,983 - BT3296 0.22 -2.3
4,222,996 - BT3296 0.23 -1.8
4,223,033 + BT3296 0.25 +0.9
4,223,034 - BT3296 0.25 -0.8
4,223,038 + BT3296 0.25 -2.1
4,223,044 - BT3296 0.25 +1.8
4,223,057 - BT3296 0.26 +1.2
4,223,063 - BT3296 0.26 -2.1
4,223,063 - BT3296 0.26 -0.4
4,223,160 + BT3296 0.31 -1.1
4,223,176 + BT3296 0.32 -2.1
4,223,276 + BT3296 0.37 +1.2
4,223,395 + BT3296 0.43 +1.8
4,223,401 - BT3296 0.43 +1.1
4,223,478 + BT3296 0.47 -2.1

Or see this region's nucleotide sequence