Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2018

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT2016 and BT2017 are separated by 16 nucleotidesBT2017 and BT2018 are separated by 77 nucleotidesBT2018 and BT2019 are separated by 55 nucleotides BT2016: BT2016 - dTDP-glucose 4,6-dehydratase (NCBI ptt file), at 2,530,168 to 2,531,304 BT2016 BT2017: BT2017 - glucose-1-phosphate thymidylyltransferase (NCBI ptt file), at 2,531,321 to 2,532,196 BT2017 BT2018: BT2018 - conserved hypothetical protein (NCBI ptt file), at 2,532,274 to 2,532,765 BT2018 BT2019: BT2019 - polyphosphate kinase (NCBI ptt file), at 2,532,821 to 2,534,899 BT2019 Position (kb) 2532 2533Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2531.313 kb on - strandat 2531.313 kb on - strandat 2531.313 kb on - strandat 2532.427 kb on + strand, within BT2018at 2532.427 kb on + strand, within BT2018at 2532.428 kb on - strand, within BT2018at 2532.428 kb on - strand, within BT2018at 2532.428 kb on - strand, within BT2018at 2532.497 kb on + strand, within BT2018at 2532.520 kb on - strand, within BT2018at 2532.583 kb on + strand, within BT2018at 2532.599 kb on - strand, within BT2018at 2532.666 kb on + strand, within BT2018at 2532.713 kb on + strand, within BT2018at 2532.729 kb on - strandat 2532.796 kb on + strandat 2532.796 kb on + strandat 2532.798 kb on + strandat 2532.814 kb on - strandat 2532.944 kb on + strandat 2533.157 kb on + strand, within BT2019at 2533.352 kb on + strand, within BT2019at 2533.424 kb on + strand, within BT2019at 2533.761 kb on + strand, within BT2019

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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2,531,313 - +1.0
2,531,313 - -3.6
2,531,313 - -1.6
2,532,427 + BT2018 0.31 -0.0
2,532,427 + BT2018 0.31 +1.6
2,532,428 - BT2018 0.31 +2.3
2,532,428 - BT2018 0.31 -0.0
2,532,428 - BT2018 0.31 +3.9
2,532,497 + BT2018 0.45 -1.4
2,532,520 - BT2018 0.50 +1.8
2,532,583 + BT2018 0.63 +1.6
2,532,599 - BT2018 0.66 -0.1
2,532,666 + BT2018 0.80 +0.3
2,532,713 + BT2018 0.89 -1.6
2,532,729 - -0.2
2,532,796 + -1.2
2,532,796 + +0.6
2,532,798 + -1.0
2,532,814 - -1.0
2,532,944 + -0.0
2,533,157 + BT2019 0.16 +4.2
2,533,352 + BT2019 0.26 -1.6
2,533,424 + BT2019 0.29 -1.9
2,533,761 + BT2019 0.45 -2.5

Or see this region's nucleotide sequence