Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0820

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0818 and BT0819 are separated by 301 nucleotidesBT0819 and BT0820 are separated by 111 nucleotidesBT0820 and BT0821 are separated by 105 nucleotides BT0818: BT0818 - two-component system sensor histidine kinase (NCBI ptt file), at 1,009,677 to 1,012,403 BT0818 BT0819: BT0819 - hypothetical protein (NCBI ptt file), at 1,012,705 to 1,012,953 BT0819 BT0820: BT0820 - conserved hypothetical protein (NCBI ptt file), at 1,013,065 to 1,013,484 BT0820 BT0821: BT0821 - putative permease (NCBI ptt file), at 1,013,590 to 1,014,978 BT0821 Position (kb) 1013 1014Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1012.069 kb on + strand, within BT0818at 1012.118 kb on + strand, within BT0818at 1012.118 kb on + strand, within BT0818at 1012.187 kb on + strandat 1012.219 kb on + strandat 1012.270 kb on + strandat 1012.271 kb on - strandat 1012.300 kb on + strandat 1012.301 kb on - strandat 1012.318 kb on - strandat 1012.491 kb on + strandat 1012.505 kb on + strandat 1012.541 kb on + strandat 1012.625 kb on + strandat 1012.626 kb on - strandat 1012.717 kb on - strandat 1012.721 kb on - strandat 1012.721 kb on - strandat 1012.900 kb on - strand, within BT0819at 1012.952 kb on - strandat 1012.957 kb on - strandat 1012.985 kb on - strandat 1012.985 kb on - strandat 1013.127 kb on - strand, within BT0820at 1013.127 kb on - strand, within BT0820at 1013.127 kb on - strand, within BT0820at 1013.289 kb on - strand, within BT0820at 1013.530 kb on + strandat 1013.647 kb on - strandat 1013.677 kb on + strandat 1013.814 kb on + strand, within BT0821at 1013.815 kb on - strand, within BT0821at 1013.815 kb on - strand, within BT0821at 1013.819 kb on + strand, within BT0821at 1013.870 kb on - strand, within BT0821at 1013.892 kb on + strand, within BT0821at 1014.006 kb on - strand, within BT0821at 1014.083 kb on - strand, within BT0821at 1014.178 kb on + strand, within BT0821at 1014.253 kb on - strand, within BT0821at 1014.285 kb on - strand, within BT0821at 1014.384 kb on + strand, within BT0821at 1014.390 kb on + strand, within BT0821at 1014.391 kb on - strand, within BT0821at 1014.464 kb on + strand, within BT0821at 1014.465 kb on - strand, within BT0821

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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1,012,069 + BT0818 0.88 -2.7
1,012,118 + BT0818 0.90 -1.4
1,012,118 + BT0818 0.90 -2.4
1,012,187 + +0.9
1,012,219 + -3.4
1,012,270 + -2.4
1,012,271 - +1.9
1,012,300 + +2.8
1,012,301 - -2.2
1,012,318 - -1.4
1,012,491 + -2.0
1,012,505 + +1.9
1,012,541 + -2.4
1,012,625 + +0.9
1,012,626 - +1.1
1,012,717 - -1.8
1,012,721 - -0.4
1,012,721 - -1.6
1,012,900 - BT0819 0.78 +2.3
1,012,952 - -1.8
1,012,957 - -2.0
1,012,985 - +0.9
1,012,985 - -1.4
1,013,127 - BT0820 0.15 -0.4
1,013,127 - BT0820 0.15 -4.7
1,013,127 - BT0820 0.15 -2.3
1,013,289 - BT0820 0.53 -2.4
1,013,530 + -0.4
1,013,647 - -2.3
1,013,677 + +0.1
1,013,814 + BT0821 0.16 -1.8
1,013,815 - BT0821 0.16 +0.1
1,013,815 - BT0821 0.16 -3.0
1,013,819 + BT0821 0.16 +1.7
1,013,870 - BT0821 0.20 -1.1
1,013,892 + BT0821 0.22 -0.2
1,014,006 - BT0821 0.30 +2.4
1,014,083 - BT0821 0.35 -1.4
1,014,178 + BT0821 0.42 -0.8
1,014,253 - BT0821 0.48 -0.4
1,014,285 - BT0821 0.50 -1.4
1,014,384 + BT0821 0.57 +2.1
1,014,390 + BT0821 0.58 -1.6
1,014,391 - BT0821 0.58 -0.4
1,014,464 + BT0821 0.63 -2.4
1,014,465 - BT0821 0.63 -1.7

Or see this region's nucleotide sequence