Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0418

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0417 and BT0418 are separated by 345 nucleotidesBT0418 and BT0419 are separated by 76 nucleotidesBT0419 and BT0420 are separated by 44 nucleotides BT0417: BT0417 - hypothetical protein (NCBI ptt file), at 503,686 to 504,654 BT0417 BT0418: BT0418 - outer membrane porin F precursor (NCBI ptt file), at 505,000 to 506,118 BT0418 BT0419: BT0419 - putative endonuclease (NCBI ptt file), at 506,195 to 506,611 BT0419 BT0420: BT0420 - peptide deformylase(PDF) (NCBI ptt file), at 506,656 to 507,210 BT0420 Position (kb) 504 505 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 504.050 kb on + strand, within BT0417at 504.266 kb on + strand, within BT0417at 504.367 kb on + strand, within BT0417at 504.371 kb on - strand, within BT0417at 504.430 kb on - strand, within BT0417at 504.565 kb on + strandat 504.652 kb on + strandat 504.652 kb on + strandat 504.832 kb on + strandat 504.884 kb on - strandat 505.060 kb on + strandat 505.818 kb on - strand, within BT0418at 506.135 kb on + strandat 506.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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504,050 + BT0417 0.38 -0.2
504,266 + BT0417 0.60 +0.2
504,367 + BT0417 0.70 +2.9
504,371 - BT0417 0.71 -2.1
504,430 - BT0417 0.77 +0.4
504,565 + -1.3
504,652 + +0.0
504,652 + -2.0
504,832 + +1.9
504,884 - +1.9
505,060 + -1.4
505,818 - BT0418 0.73 -2.8
506,135 + +2.4
506,648 + -1.8

Or see this region's nucleotide sequence