Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0254

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0253 and BT0254 are separated by 441 nucleotidesBT0254 and BT0255 are separated by 84 nucleotidesBT0255 and BT0256 overlap by 1 nucleotidesBT0256 and BT0257 are separated by 124 nucleotides BT0253: BT0253 - hypothetical protein (NCBI ptt file), at 281,298 to 282,143 BT0253 BT0254: BT0254 - putative Fe-S oxidoreductase (NCBI ptt file), at 282,585 to 284,447 BT0254 BT0255: BT0255 - hypothetical protein (NCBI ptt file), at 284,532 to 284,756 BT0255 BT0256: BT0256 - hypothetical protein (NCBI ptt file), at 284,756 to 285,073 BT0256 BT0257: BT0257 - xanthan lyase (NCBI ptt file), at 285,198 to 288,110 BT0257 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 281.629 kb on + strand, within BT0253at 281.764 kb on - strand, within BT0253at 281.778 kb on - strand, within BT0253at 281.832 kb on - strand, within BT0253at 281.885 kb on + strand, within BT0253at 281.975 kb on + strand, within BT0253at 281.992 kb on + strand, within BT0253at 282.014 kb on + strand, within BT0253at 282.036 kb on - strand, within BT0253at 282.068 kb on - strandat 282.072 kb on - strandat 282.147 kb on - strandat 282.193 kb on - strandat 282.193 kb on - strandat 282.286 kb on + strandat 282.314 kb on + strandat 282.327 kb on + strandat 282.327 kb on + strandat 282.350 kb on - strandat 282.448 kb on - strandat 282.474 kb on - strandat 282.481 kb on + strandat 282.482 kb on - strandat 282.489 kb on + strandat 282.537 kb on - strandat 282.538 kb on + strandat 282.538 kb on + strandat 282.643 kb on - strandat 282.679 kb on + strandat 282.749 kb on + strandat 282.749 kb on + strandat 282.807 kb on - strand, within BT0254at 282.903 kb on - strand, within BT0254at 282.912 kb on + strand, within BT0254at 282.915 kb on - strand, within BT0254at 282.928 kb on - strand, within BT0254at 283.084 kb on + strandat 283.084 kb on + strand, within BT0254at 283.134 kb on + strand, within BT0254at 283.135 kb on - strand, within BT0254at 283.135 kb on - strand, within BT0254at 283.200 kb on - strand, within BT0254at 283.201 kb on + strand, within BT0254at 283.202 kb on - strand, within BT0254at 283.202 kb on - strand, within BT0254at 283.203 kb on + strand, within BT0254at 283.203 kb on + strand, within BT0254at 283.232 kb on + strand, within BT0254at 283.320 kb on - strand, within BT0254at 283.348 kb on - strand, within BT0254at 283.386 kb on + strand, within BT0254at 283.514 kb on - strand, within BT0254at 283.634 kb on + strand, within BT0254at 283.641 kb on + strand, within BT0254at 283.674 kb on - strand, within BT0254at 283.799 kb on - strand, within BT0254at 283.894 kb on - strand, within BT0254at 283.953 kb on + strand, within BT0254at 283.953 kb on + strand, within BT0254at 283.985 kb on - strand, within BT0254at 284.028 kb on + strand, within BT0254at 284.029 kb on - strand, within BT0254at 284.032 kb on - strand, within BT0254at 284.090 kb on - strand, within BT0254at 284.184 kb on - strand, within BT0254at 284.340 kb on + strandat 284.341 kb on - strandat 284.341 kb on - strandat 284.344 kb on + strandat 284.415 kb on - strandat 284.459 kb on - strandat 284.507 kb on + strandat 284.520 kb on + strandat 284.520 kb on + strandat 284.617 kb on + strand, within BT0255at 284.625 kb on + strand, within BT0255at 284.626 kb on - strand, within BT0255at 284.723 kb on - strand, within BT0255at 284.758 kb on - strandat 284.802 kb on + strand, within BT0256at 284.843 kb on - strand, within BT0256at 284.855 kb on - strand, within BT0256at 284.855 kb on - strand, within BT0256at 284.861 kb on + strand, within BT0256at 284.862 kb on - strand, within BT0256at 284.862 kb on - strand, within BT0256at 284.862 kb on - strand, within BT0256at 284.955 kb on - strand, within BT0256at 284.995 kb on - strand, within BT0256at 285.032 kb on + strand, within BT0256at 285.033 kb on - strand, within BT0256at 285.033 kb on - strand, within BT0256at 285.062 kb on + strandat 285.064 kb on + strandat 285.065 kb on - strandat 285.065 kb on - strandat 285.065 kb on - strandat 285.067 kb on + strandat 285.068 kb on - strandat 285.087 kb on + strandat 285.087 kb on + strandat 285.097 kb on + strandat 285.097 kb on + strandat 285.097 kb on + strandat 285.182 kb on + strandat 285.351 kb on - strandat 285.351 kb on - strandat 285.407 kb on - strandat 285.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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281,629 + BT0253 0.39 -1.3
281,764 - BT0253 0.55 -1.8
281,778 - BT0253 0.57 -1.2
281,832 - BT0253 0.63 +0.5
281,885 + BT0253 0.69 +0.5
281,975 + BT0253 0.80 -0.4
281,992 + BT0253 0.82 +3.0
282,014 + BT0253 0.85 -1.8
282,036 - BT0253 0.87 +1.3
282,068 - -0.5
282,072 - +0.3
282,147 - -0.8
282,193 - -1.3
282,193 - -0.8
282,286 + -1.2
282,314 + +3.4
282,327 + -0.3
282,327 + -1.3
282,350 - -0.3
282,448 - -0.3
282,474 - -0.8
282,481 + +0.7
282,482 - -0.3
282,489 + -1.0
282,537 - -2.5
282,538 + +2.2
282,538 + -1.0
282,643 - +2.5
282,679 + +0.7
282,749 + -0.3
282,749 + -2.6
282,807 - BT0254 0.12 +1.0
282,903 - BT0254 0.17 +2.4
282,912 + BT0254 0.18 +0.2
282,915 - BT0254 0.18 -0.1
282,928 - BT0254 0.18 +3.9
283,084 + -1.3
283,084 + BT0254 0.27 -0.3
283,134 + BT0254 0.29 -2.6
283,135 - BT0254 0.30 +3.3
283,135 - BT0254 0.30 -1.1
283,200 - BT0254 0.33 -1.5
283,201 + BT0254 0.33 +0.4
283,202 - BT0254 0.33 -0.1
283,202 - BT0254 0.33 +1.5
283,203 + BT0254 0.33 +1.3
283,203 + BT0254 0.33 -2.6
283,232 + BT0254 0.35 +3.3
283,320 - BT0254 0.39 -2.9
283,348 - BT0254 0.41 -1.3
283,386 + BT0254 0.43 +1.7
283,514 - BT0254 0.50 -0.9
283,634 + BT0254 0.56 +3.5
283,641 + BT0254 0.57 +0.5
283,674 - BT0254 0.58 +1.3
283,799 - BT0254 0.65 +4.3
283,894 - BT0254 0.70 +1.9
283,953 + BT0254 0.73 -0.3
283,953 + BT0254 0.73 -0.1
283,985 - BT0254 0.75 -2.3
284,028 + BT0254 0.77 -0.1
284,029 - BT0254 0.78 +2.6
284,032 - BT0254 0.78 +1.1
284,090 - BT0254 0.81 +2.0
284,184 - BT0254 0.86 +0.1
284,340 + -0.9
284,341 - -0.5
284,341 - -4.1
284,344 + -0.4
284,415 - +1.9
284,459 - +0.1
284,507 + +0.0
284,520 + +0.1
284,520 + -2.0
284,617 + BT0255 0.38 -1.9
284,625 + BT0255 0.41 -0.7
284,626 - BT0255 0.42 -2.0
284,723 - BT0255 0.85 +0.9
284,758 - -0.3
284,802 + BT0256 0.14 -3.4
284,843 - BT0256 0.27 -1.9
284,855 - BT0256 0.31 -2.3
284,855 - BT0256 0.31 -2.3
284,861 + BT0256 0.33 -1.9
284,862 - BT0256 0.33 -1.6
284,862 - BT0256 0.33 -3.8
284,862 - BT0256 0.33 -0.3
284,955 - BT0256 0.63 -3.1
284,995 - BT0256 0.75 +0.9
285,032 + BT0256 0.87 -2.6
285,033 - BT0256 0.87 -0.7
285,033 - BT0256 0.87 -1.3
285,062 + -1.9
285,064 + -4.3
285,065 - +0.7
285,065 - -0.3
285,065 - -3.5
285,067 + +1.9
285,068 - -3.1
285,087 + -2.0
285,087 + -5.3
285,097 + -1.3
285,097 + -1.3
285,097 + -1.6
285,182 + -1.9
285,351 - -1.2
285,351 - -3.2
285,407 - -0.4
285,407 - +1.1

Or see this region's nucleotide sequence