Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0115

Experiment: BHIS with Chlorpromazine 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0114 and BT0115 are separated by 12 nucleotidesBT0115 and BT0116 are separated by 4 nucleotides BT0114: BT0114 - putative symporter, arsenic resistance membrane protein (NCBI ptt file), at 105,527 to 106,573 BT0114 BT0115: BT0115 - arsenate reductase (NCBI ptt file), at 106,586 to 107,014 BT0115 BT0116: BT0116 - arsenical pump-driving ATPase (NCBI ptt file), at 107,019 to 108,731 BT0116 Position (kb) 106 107 108Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 105.815 kb on - strand, within BT0114at 105.818 kb on + strand, within BT0114at 105.935 kb on + strand, within BT0114at 105.935 kb on + strand, within BT0114at 105.968 kb on + strand, within BT0114at 105.971 kb on + strand, within BT0114at 106.017 kb on - strand, within BT0114at 106.018 kb on + strand, within BT0114at 106.094 kb on + strand, within BT0114at 106.177 kb on + strand, within BT0114at 106.216 kb on - strand, within BT0114at 106.268 kb on + strand, within BT0114at 106.269 kb on - strand, within BT0114at 106.269 kb on - strand, within BT0114at 106.272 kb on + strand, within BT0114at 106.272 kb on + strand, within BT0114at 106.272 kb on + strand, within BT0114at 106.273 kb on - strand, within BT0114at 106.395 kb on + strand, within BT0114at 106.427 kb on + strand, within BT0114at 106.427 kb on + strand, within BT0114at 106.482 kb on + strandat 106.483 kb on - strandat 106.483 kb on - strandat 106.511 kb on - strandat 106.529 kb on - strandat 106.537 kb on - strandat 106.640 kb on + strand, within BT0115at 106.640 kb on + strand, within BT0115at 106.747 kb on + strand, within BT0115at 106.794 kb on + strand, within BT0115at 106.815 kb on + strand, within BT0115at 106.877 kb on + strand, within BT0115at 106.987 kb on + strandat 107.020 kb on + strandat 107.020 kb on + strandat 107.154 kb on + strandat 107.277 kb on + strand, within BT0116at 107.332 kb on - strand, within BT0116at 107.494 kb on - strand, within BT0116at 107.498 kb on - strand, within BT0116at 107.582 kb on + strand, within BT0116at 107.788 kb on - strand, within BT0116at 107.832 kb on - strand, within BT0116at 107.847 kb on + strand, within BT0116at 107.852 kb on + strand, within BT0116at 107.870 kb on + strand, within BT0116at 107.904 kb on - strand, within BT0116at 107.906 kb on - strand, within BT0116at 107.937 kb on - strand, within BT0116at 107.966 kb on - strand, within BT0116

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Chlorpromazine 0.1 mM
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105,815 - BT0114 0.28 -1.8
105,818 + BT0114 0.28 -0.3
105,935 + BT0114 0.39 -1.1
105,935 + BT0114 0.39 -1.8
105,968 + BT0114 0.42 -0.6
105,971 + BT0114 0.42 +0.1
106,017 - BT0114 0.47 -1.6
106,018 + BT0114 0.47 -1.3
106,094 + BT0114 0.54 -1.1
106,177 + BT0114 0.62 -0.2
106,216 - BT0114 0.66 -0.7
106,268 + BT0114 0.71 -0.8
106,269 - BT0114 0.71 -0.6
106,269 - BT0114 0.71 -1.8
106,272 + BT0114 0.71 -0.2
106,272 + BT0114 0.71 +2.1
106,272 + BT0114 0.71 +2.4
106,273 - BT0114 0.71 -0.5
106,395 + BT0114 0.83 -3.2
106,427 + BT0114 0.86 -2.5
106,427 + BT0114 0.86 +2.1
106,482 + -0.2
106,483 - -3.9
106,483 - +1.4
106,511 - -0.8
106,529 - -2.5
106,537 - +0.4
106,640 + BT0115 0.13 -3.8
106,640 + BT0115 0.13 -2.2
106,747 + BT0115 0.38 -1.5
106,794 + BT0115 0.48 +0.8
106,815 + BT0115 0.53 -2.4
106,877 + BT0115 0.68 -2.5
106,987 + -1.2
107,020 + -2.8
107,020 + -1.2
107,154 + -3.7
107,277 + BT0116 0.15 -1.5
107,332 - BT0116 0.18 -2.5
107,494 - BT0116 0.28 -1.8
107,498 - BT0116 0.28 -2.5
107,582 + BT0116 0.33 -0.2
107,788 - BT0116 0.45 -4.3
107,832 - BT0116 0.47 -3.2
107,847 + BT0116 0.48 -1.4
107,852 + BT0116 0.49 -0.8
107,870 + BT0116 0.50 +1.2
107,904 - BT0116 0.52 -0.2
107,906 - BT0116 0.52 -1.8
107,937 - BT0116 0.54 -1.9
107,966 - BT0116 0.55 -0.2

Or see this region's nucleotide sequence