Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0491 and argC are separated by 235 nucleotides argC and DVU0493 are separated by 9 nucleotides DVU0493 and DVU0494 are separated by 65 nucleotides
DVU0491: DVU0491 - HDIG domain protein (TIGR), at 559,822 to 561,027
DVU0491
DVU0492: argC - N-acetyl-gamma-glutamyl-phosphate reductase (TIGR), at 561,263 to 562,327
argC
DVU0493: DVU0493 - hypothetical protein (TIGR), at 562,337 to 562,645
DVU0493
DVU0494: DVU0494 - aminotransferase, class V (TIGR), at 562,711 to 563,880
DVU0494
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 560.288 kb on + strand, within DVU0491 at 560.302 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.303 kb on + strand, within DVU0491 at 560.309 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.311 kb on - strand, within DVU0491 at 560.353 kb on + strand, within DVU0491 at 560.473 kb on - strand, within DVU0491 at 560.514 kb on - strand, within DVU0491 at 560.574 kb on + strand, within DVU0491 at 560.870 kb on - strand, within DVU0491 at 560.992 kb on + strand at 561.091 kb on + strand at 561.105 kb on - strand at 561.123 kb on - strand at 561.204 kb on - strand at 561.227 kb on + strand at 561.275 kb on - strand at 561.275 kb on - strand at 561.285 kb on - strand at 561.329 kb on + strand at 561.521 kb on - strand, within argC at 561.582 kb on - strand, within argC at 561.700 kb on + strand, within argC at 561.708 kb on - strand, within argC at 561.709 kb on - strand, within argC at 561.719 kb on + strand, within argC at 561.727 kb on - strand, within argC at 561.737 kb on - strand, within argC at 561.830 kb on - strand, within argC at 561.832 kb on - strand, within argC at 561.841 kb on + strand, within argC at 561.858 kb on - strand, within argC at 561.885 kb on + strand, within argC at 561.944 kb on - strand, within argC at 561.959 kb on + strand, within argC at 562.163 kb on + strand, within argC at 562.182 kb on + strand, within argC at 562.190 kb on - strand, within argC at 562.324 kb on + strand at 562.379 kb on - strand, within DVU0493 at 562.425 kb on + strand, within DVU0493 at 562.475 kb on - strand, within DVU0493 at 562.625 kb on + strand at 562.641 kb on + strand at 562.655 kb on + strand at 562.700 kb on + strand at 562.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 560,288 + DVU0491 0.39 -1.2 560,302 + DVU0491 0.40 -0.0 560,303 + DVU0491 0.40 -0.1 560,303 + DVU0491 0.40 +0.1 560,303 + DVU0491 0.40 -0.5 560,309 - DVU0491 0.40 -0.4 560,311 - DVU0491 0.41 -0.3 560,311 - DVU0491 0.41 +0.1 560,311 - DVU0491 0.41 +0.0 560,353 + DVU0491 0.44 -0.1 560,473 - DVU0491 0.54 -0.4 560,514 - DVU0491 0.57 +1.3 560,574 + DVU0491 0.62 +1.4 560,870 - DVU0491 0.87 -0.1 560,992 + +0.8 561,091 + -0.0 561,105 - -1.5 561,123 - +0.0 561,204 - -0.1 561,227 + +0.1 561,275 - +0.1 561,275 - -2.0 561,285 - +0.0 561,329 + -1.0 561,521 - argC DVU0492 0.24 -2.6 561,582 - argC DVU0492 0.30 -0.9 561,700 + argC DVU0492 0.41 -3.1 561,708 - argC DVU0492 0.42 -2.5 561,709 - argC DVU0492 0.42 -1.7 561,719 + argC DVU0492 0.43 -2.2 561,727 - argC DVU0492 0.44 -1.9 561,737 - argC DVU0492 0.45 -2.1 561,830 - argC DVU0492 0.53 -2.6 561,832 - argC DVU0492 0.53 -3.4 561,841 + argC DVU0492 0.54 -0.7 561,858 - argC DVU0492 0.56 -2.4 561,885 + argC DVU0492 0.58 -3.1 561,944 - argC DVU0492 0.64 -3.0 561,959 + argC DVU0492 0.65 -2.4 562,163 + argC DVU0492 0.85 -1.7 562,182 + argC DVU0492 0.86 -1.4 562,190 - argC DVU0492 0.87 -3.0 562,324 + -1.4 562,379 - DVU0493 0.14 -0.1 562,425 + DVU0493 0.28 -0.5 562,475 - DVU0493 0.45 -0.3 562,625 + -0.7 562,641 + -0.2 562,655 + -0.1 562,700 + +0.8 562,708 - +0.5
Or see this region's nucleotide sequence