Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0360

Experiment: Formate/Acetate-Sulfite (60/1-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0359 and ilvB-1 are separated by 696 nucleotidesilvB-1 and ilvH are separated by 4 nucleotidesilvH and DVU0362 are separated by 50 nucleotides DVU0359: DVU0359 - HesB-like domain (TIGR), at 408,368 to 408,694 DVU0359 DVU0360: ilvB-1 - acetolactate synthase, large subunit, biosynthetic type (TIGR), at 409,391 to 411,082 ilvB-1 DVU0361: ilvH - acetolactate synthase III, small subunit, putative (TIGR), at 411,087 to 411,410 ilvH DVU0362: DVU0362 - conserved hypothetical protein (TIGR), at 411,461 to 412,240 DVU0362 Position (kb) 409 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1at 408.482 kb on + strand, within DVU0359at 408.514 kb on + strand, within DVU0359at 408.551 kb on + strand, within DVU0359at 408.628 kb on - strand, within DVU0359at 408.846 kb on - strandat 408.934 kb on + strandat 408.942 kb on - strandat 408.975 kb on + strandat 409.019 kb on - strandat 409.021 kb on + strandat 409.022 kb on + strandat 409.071 kb on + strandat 409.116 kb on - strandat 409.128 kb on - strandat 409.148 kb on + strandat 409.338 kb on + strandat 409.345 kb on - strandat 409.345 kb on - strandat 409.346 kb on - strandat 409.436 kb on + strandat 409.486 kb on + strandat 409.526 kb on + strandat 409.534 kb on - strandat 409.536 kb on + strandat 409.536 kb on + strandat 409.544 kb on - strandat 409.544 kb on - strandat 409.557 kb on + strandat 409.576 kb on - strand, within ilvB-1at 409.620 kb on - strand, within ilvB-1at 409.707 kb on + strand, within ilvB-1at 409.709 kb on + strand, within ilvB-1at 409.715 kb on - strand, within ilvB-1at 409.741 kb on + strand, within ilvB-1at 409.873 kb on + strand, within ilvB-1at 409.883 kb on + strand, within ilvB-1at 409.937 kb on - strand, within ilvB-1at 410.014 kb on - strand, within ilvB-1at 410.078 kb on + strand, within ilvB-1at 410.083 kb on + strand, within ilvB-1at 410.091 kb on - strand, within ilvB-1at 410.152 kb on + strand, within ilvB-1at 410.203 kb on + strand, within ilvB-1at 410.257 kb on + strand, within ilvB-1at 410.281 kb on - strand, within ilvB-1at 410.289 kb on + strand, within ilvB-1at 410.297 kb on - strand, within ilvB-1at 410.407 kb on + strand, within ilvB-1at 410.412 kb on + strand, within ilvB-1at 410.451 kb on + strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.459 kb on - strand, within ilvB-1at 410.485 kb on - strand, within ilvB-1at 410.549 kb on + strand, within ilvB-1at 410.564 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.569 kb on + strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.572 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.577 kb on - strand, within ilvB-1at 410.612 kb on - strand, within ilvB-1at 410.657 kb on + strand, within ilvB-1at 410.666 kb on + strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.670 kb on - strand, within ilvB-1at 410.682 kb on - strand, within ilvB-1at 410.786 kb on + strand, within ilvB-1at 410.787 kb on + strand, within ilvB-1at 410.787 kb on - strand, within ilvB-1at 410.793 kb on + strand, within ilvB-1at 410.801 kb on - strand, within ilvB-1at 410.966 kb on - strandat 410.972 kb on - strandat 411.012 kb on - strandat 411.094 kb on + strandat 411.097 kb on - strandat 411.175 kb on - strand, within ilvHat 411.373 kb on + strand, within ilvHat 411.389 kb on - strandat 411.409 kb on + strandat 411.532 kb on - strandat 411.565 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.626 kb on - strand, within DVU0362at 411.631 kb on - strand, within DVU0362at 411.642 kb on + strand, within DVU0362at 411.649 kb on - strand, within DVU0362at 411.683 kb on - strand, within DVU0362at 411.708 kb on - strand, within DVU0362at 411.727 kb on - strand, within DVU0362at 411.915 kb on + strand, within DVU0362at 411.938 kb on + strand, within DVU0362at 411.996 kb on - strand, within DVU0362at 412.062 kb on - strand, within DVU0362

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM)
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408,482 + DVU0359 0.35 -0.2
408,514 + DVU0359 0.45 -0.3
408,551 + DVU0359 0.56 -0.1
408,628 - DVU0359 0.80 -0.1
408,846 - -0.9
408,934 + +0.2
408,942 - -0.3
408,975 + -0.1
409,019 - +0.1
409,021 + +1.3
409,022 + -0.0
409,071 + +0.7
409,116 - -1.2
409,128 - +0.4
409,148 + -0.1
409,338 + -0.8
409,345 - -0.9
409,345 - -0.6
409,346 - -0.2
409,436 + -0.8
409,486 + -0.8
409,526 + -0.6
409,534 - +0.0
409,536 + -1.0
409,536 + -0.7
409,544 - -0.5
409,544 - -0.2
409,557 + -0.1
409,576 - ilvB-1 DVU0360 0.11 -0.8
409,620 - ilvB-1 DVU0360 0.14 -0.6
409,707 + ilvB-1 DVU0360 0.19 -0.7
409,709 + ilvB-1 DVU0360 0.19 -0.8
409,715 - ilvB-1 DVU0360 0.19 -0.2
409,741 + ilvB-1 DVU0360 0.21 +0.1
409,873 + ilvB-1 DVU0360 0.28 -0.3
409,883 + ilvB-1 DVU0360 0.29 -1.0
409,937 - ilvB-1 DVU0360 0.32 -1.0
410,014 - ilvB-1 DVU0360 0.37 -2.6
410,078 + ilvB-1 DVU0360 0.41 -0.7
410,083 + ilvB-1 DVU0360 0.41 -0.6
410,091 - ilvB-1 DVU0360 0.41 -0.1
410,152 + ilvB-1 DVU0360 0.45 -0.9
410,203 + ilvB-1 DVU0360 0.48 -0.8
410,257 + ilvB-1 DVU0360 0.51 -0.6
410,281 - ilvB-1 DVU0360 0.53 -0.9
410,289 + ilvB-1 DVU0360 0.53 -0.5
410,297 - ilvB-1 DVU0360 0.54 -0.0
410,407 + ilvB-1 DVU0360 0.60 -0.6
410,412 + ilvB-1 DVU0360 0.60 -1.6
410,451 + ilvB-1 DVU0360 0.63 -0.8
410,459 - ilvB-1 DVU0360 0.63 -1.4
410,459 - ilvB-1 DVU0360 0.63 -0.9
410,459 - ilvB-1 DVU0360 0.63 -0.8
410,485 - ilvB-1 DVU0360 0.65 -0.8
410,549 + ilvB-1 DVU0360 0.68 -1.8
410,564 + ilvB-1 DVU0360 0.69 -1.4
410,569 + ilvB-1 DVU0360 0.70 -0.7
410,569 + ilvB-1 DVU0360 0.70 -0.3
410,569 + ilvB-1 DVU0360 0.70 -3.0
410,569 + ilvB-1 DVU0360 0.70 -1.1
410,569 + ilvB-1 DVU0360 0.70 -0.6
410,569 + ilvB-1 DVU0360 0.70 -1.8
410,569 + ilvB-1 DVU0360 0.70 -0.5
410,569 + ilvB-1 DVU0360 0.70 -0.6
410,569 + ilvB-1 DVU0360 0.70 -1.8
410,569 + ilvB-1 DVU0360 0.70 -0.1
410,569 + ilvB-1 DVU0360 0.70 -1.4
410,569 + ilvB-1 DVU0360 0.70 -1.8
410,569 + ilvB-1 DVU0360 0.70 -1.0
410,569 + ilvB-1 DVU0360 0.70 -0.9
410,572 - ilvB-1 DVU0360 0.70 -1.4
410,572 - ilvB-1 DVU0360 0.70 -1.0
410,577 - ilvB-1 DVU0360 0.70 -0.2
410,577 - ilvB-1 DVU0360 0.70 -1.0
410,577 - ilvB-1 DVU0360 0.70 -0.9
410,577 - ilvB-1 DVU0360 0.70 -1.9
410,577 - ilvB-1 DVU0360 0.70 -0.6
410,577 - ilvB-1 DVU0360 0.70 -0.6
410,577 - ilvB-1 DVU0360 0.70 -0.8
410,577 - ilvB-1 DVU0360 0.70 -0.9
410,577 - ilvB-1 DVU0360 0.70 -1.5
410,577 - ilvB-1 DVU0360 0.70 -1.2
410,577 - ilvB-1 DVU0360 0.70 -0.4
410,577 - ilvB-1 DVU0360 0.70 -0.9
410,577 - ilvB-1 DVU0360 0.70 +0.1
410,577 - ilvB-1 DVU0360 0.70 -0.7
410,612 - ilvB-1 DVU0360 0.72 -2.1
410,657 + ilvB-1 DVU0360 0.75 -0.8
410,666 + ilvB-1 DVU0360 0.75 -2.5
410,670 - ilvB-1 DVU0360 0.76 -0.2
410,670 - ilvB-1 DVU0360 0.76 -0.9
410,682 - ilvB-1 DVU0360 0.76 +0.8
410,786 + ilvB-1 DVU0360 0.82 -0.1
410,787 + ilvB-1 DVU0360 0.83 -0.8
410,787 - ilvB-1 DVU0360 0.83 -0.1
410,793 + ilvB-1 DVU0360 0.83 +0.6
410,801 - ilvB-1 DVU0360 0.83 -0.7
410,966 - -0.8
410,972 - -1.0
411,012 - +0.6
411,094 + -0.5
411,097 - -0.7
411,175 - ilvH DVU0361 0.27 -0.3
411,373 + ilvH DVU0361 0.88 +0.7
411,389 - +0.1
411,409 + +0.2
411,532 - +0.6
411,565 - DVU0362 0.13 -2.3
411,626 - DVU0362 0.21 +0.2
411,626 - DVU0362 0.21 +0.2
411,631 - DVU0362 0.22 -0.1
411,642 + DVU0362 0.23 -0.0
411,649 - DVU0362 0.24 -0.2
411,683 - DVU0362 0.28 -0.8
411,708 - DVU0362 0.32 -0.1
411,727 - DVU0362 0.34 -0.8
411,915 + DVU0362 0.58 +0.1
411,938 + DVU0362 0.61 -0.4
411,996 - DVU0362 0.69 -0.0
412,062 - DVU0362 0.77 -0.5

Or see this region's nucleotide sequence