Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0145 and DVU0146 are separated by 143 nucleotides DVU0146 and DVU0147 overlap by 4 nucleotides DVU0147 and DVU0148 are separated by 72 nucleotides DVU0148 and DVU0149 are separated by 22 nucleotides
DVU0145: DVU0145 - response regulator (TIGR), at 180,029 to 180,436
DVU0145
DVU0146: DVU0146 - hypothetical protein (TIGR), at 180,580 to 181,389
DVU0146
DVU0147: DVU0147 - lipoprotein, putative (TIGR), at 181,386 to 181,646
DVU0147
DVU0148: DVU0148 - lipoprotein, putative (TIGR), at 181,719 to 182,330
DVU0148
DVU0149: DVU0149 - membrane protein, putative (TIGR), at 182,353 to 183,405
DVU0149
Position (kb) 181
182 Strain fitness (log2 ratio) -1
0
1
2 at 180.411 kb on - strand at 180.415 kb on + strand at 180.622 kb on + strand at 180.739 kb on - strand, within DVU0146 at 180.779 kb on - strand, within DVU0146 at 180.791 kb on + strand, within DVU0146 at 180.833 kb on + strand, within DVU0146 at 180.839 kb on - strand, within DVU0146 at 180.862 kb on + strand, within DVU0146 at 180.985 kb on + strand, within DVU0146 at 181.127 kb on - strand, within DVU0146 at 181.188 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.202 kb on + strand, within DVU0146 at 181.220 kb on - strand, within DVU0146 at 181.260 kb on + strand, within DVU0146 at 181.312 kb on + strand at 181.378 kb on + strand at 181.386 kb on - strand at 181.387 kb on + strand at 181.471 kb on - strand, within DVU0147 at 181.485 kb on - strand, within DVU0147 at 181.535 kb on + strand, within DVU0147 at 181.539 kb on + strand, within DVU0147 at 181.565 kb on - strand, within DVU0147 at 181.610 kb on - strand, within DVU0147 at 181.613 kb on - strand, within DVU0147 at 181.625 kb on + strand at 181.654 kb on - strand at 181.684 kb on + strand at 181.758 kb on + strand at 181.769 kb on - strand at 181.836 kb on + strand, within DVU0148 at 181.836 kb on + strand, within DVU0148 at 181.869 kb on + strand, within DVU0148 at 181.892 kb on - strand, within DVU0148 at 181.926 kb on + strand, within DVU0148 at 181.985 kb on + strand, within DVU0148 at 182.022 kb on + strand, within DVU0148 at 182.029 kb on + strand, within DVU0148 at 182.036 kb on + strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.061 kb on - strand, within DVU0148 at 182.089 kb on + strand, within DVU0148 at 182.137 kb on - strand, within DVU0148 at 182.158 kb on - strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.206 kb on + strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.214 kb on - strand, within DVU0148 at 182.290 kb on - strand at 182.333 kb on - strand at 182.379 kb on - strand at 182.390 kb on + strand at 182.397 kb on - strand at 182.402 kb on - strand at 182.436 kb on + strand at 182.444 kb on - strand at 182.474 kb on + strand, within DVU0149 at 182.474 kb on + strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.482 kb on - strand, within DVU0149 at 182.515 kb on + strand, within DVU0149
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 180,411 - -0.2 180,415 + +0.1 180,622 + +0.2 180,739 - DVU0146 0.20 -0.2 180,779 - DVU0146 0.25 +0.6 180,791 + DVU0146 0.26 +0.7 180,833 + DVU0146 0.31 +0.0 180,839 - DVU0146 0.32 -0.6 180,862 + DVU0146 0.35 -0.3 180,985 + DVU0146 0.50 +0.0 181,127 - DVU0146 0.68 -0.3 181,188 + DVU0146 0.75 -0.2 181,202 + DVU0146 0.77 +0.0 181,202 + DVU0146 0.77 -0.2 181,220 - DVU0146 0.79 -0.9 181,260 + DVU0146 0.84 +0.0 181,312 + +0.7 181,378 + +0.1 181,386 - -0.1 181,387 + -0.1 181,471 - DVU0147 0.33 +0.0 181,485 - DVU0147 0.38 +1.8 181,535 + DVU0147 0.57 +0.1 181,539 + DVU0147 0.59 -0.7 181,565 - DVU0147 0.69 -1.3 181,610 - DVU0147 0.86 +1.0 181,613 - DVU0147 0.87 -0.3 181,625 + -0.6 181,654 - -0.2 181,684 + +0.3 181,758 + -0.3 181,769 - +0.6 181,836 + DVU0148 0.19 -0.3 181,836 + DVU0148 0.19 -0.0 181,869 + DVU0148 0.25 +0.1 181,892 - DVU0148 0.28 +0.2 181,926 + DVU0148 0.34 -0.7 181,985 + DVU0148 0.43 +0.1 182,022 + DVU0148 0.50 +0.1 182,029 + DVU0148 0.51 -0.0 182,036 + DVU0148 0.52 -0.7 182,061 - DVU0148 0.56 -0.9 182,061 - DVU0148 0.56 -0.5 182,089 + DVU0148 0.60 -1.6 182,137 - DVU0148 0.68 +0.0 182,158 - DVU0148 0.72 +1.4 182,206 + DVU0148 0.80 -0.2 182,206 + DVU0148 0.80 -0.3 182,206 + DVU0148 0.80 +0.3 182,206 + DVU0148 0.80 -0.4 182,214 - DVU0148 0.81 +0.1 182,214 - DVU0148 0.81 -0.2 182,214 - DVU0148 0.81 +0.3 182,214 - DVU0148 0.81 -0.3 182,214 - DVU0148 0.81 -0.0 182,290 - -0.1 182,333 - +0.2 182,379 - +0.2 182,390 + -0.0 182,397 - -0.9 182,402 - -0.8 182,436 + -0.3 182,444 - -0.1 182,474 + DVU0149 0.11 +0.1 182,474 + DVU0149 0.11 -0.1 182,482 - DVU0149 0.12 -1.0 182,482 - DVU0149 0.12 +0.1 182,482 - DVU0149 0.12 -0.1 182,515 + DVU0149 0.15 -0.3
Or see this region's nucleotide sequence