Experiment: Formate/Acetate-Sulfite (60/1-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3202 and DORF46408 overlap by 4 nucleotides DORF46408 and holB are separated by 180 nucleotides holB and purA are separated by 51 nucleotides
DVU3202: DVU3202 - hydrolase, TatD family (TIGR), at 3,365,112 to 3,365,948
DVU3202
DORF46408: DORF46408 - no description, at 3,365,945 to 3,366,082
DORF46408
DVU3203: holB - DNA polymerase III, delta prime subunit, putative (TIGR), at 3,366,263 to 3,367,180
holB
DVU3204: purA - adenylosuccinate synthetase (TIGR), at 3,367,232 to 3,368,512
purA
Position (kb)
3366
3367
3368 Strain fitness (log2 ratio)
-1
0
1 at 3365.302 kb on + strand, within DVU3202 at 3365.354 kb on + strand, within DVU3202 at 3365.406 kb on + strand, within DVU3202 at 3365.414 kb on - strand, within DVU3202 at 3365.541 kb on + strand, within DVU3202 at 3365.549 kb on - strand, within DVU3202 at 3365.585 kb on + strand, within DVU3202 at 3365.586 kb on - strand, within DVU3202 at 3365.702 kb on + strand, within DVU3202 at 3365.705 kb on - strand, within DVU3202 at 3365.726 kb on + strand, within DVU3202 at 3365.734 kb on - strand, within DVU3202 at 3365.734 kb on - strand, within DVU3202 at 3365.779 kb on + strand, within DVU3202 at 3365.867 kb on + strand at 3365.868 kb on + strand at 3365.885 kb on + strand at 3365.885 kb on + strand at 3365.886 kb on - strand at 3365.956 kb on - strand at 3365.958 kb on + strand at 3365.977 kb on - strand, within DORF46408 at 3365.998 kb on + strand, within DORF46408 at 3365.999 kb on - strand, within DORF46408 at 3366.063 kb on - strand, within DORF46408 at 3366.282 kb on + strand at 3367.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM) remove 3,365,302 + DVU3202 0.23 -0.2 3,365,354 + DVU3202 0.29 -0.1 3,365,406 + DVU3202 0.35 +0.3 3,365,414 - DVU3202 0.36 +0.3 3,365,541 + DVU3202 0.51 -0.1 3,365,549 - DVU3202 0.52 -0.7 3,365,585 + DVU3202 0.57 -0.3 3,365,586 - DVU3202 0.57 +1.0 3,365,702 + DVU3202 0.70 -1.2 3,365,705 - DVU3202 0.71 -0.2 3,365,726 + DVU3202 0.73 +0.0 3,365,734 - DVU3202 0.74 -0.3 3,365,734 - DVU3202 0.74 -1.1 3,365,779 + DVU3202 0.80 +0.2 3,365,867 + +0.5 3,365,868 + -0.0 3,365,885 + +0.2 3,365,885 + +0.7 3,365,886 - -0.5 3,365,956 - -0.0 3,365,958 + +0.2 3,365,977 - DORF46408 0.23 -0.1 3,365,998 + DORF46408 0.38 +0.1 3,365,999 - DORF46408 0.39 -0.8 3,366,063 - DORF46408 0.86 +0.4 3,366,282 + -0.2 3,367,148 - -0.4
Or see this region's nucleotide sequence