Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2614

Experiment: Formate/Acetate-Sulfite (60/1-20 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2612 and DVU2613 are separated by 46 nucleotidesDVU2613 and DVU2614 are separated by 74 nucleotidesDVU2614 and DVU2615 are separated by 602 nucleotides DVU2612: DVU2612 - conserved hypothetical protein (TIGR), at 2,731,396 to 2,731,785 DVU2612 DVU2613: DVU2613 - hypothetical protein (TIGR), at 2,731,832 to 2,732,398 DVU2613 DVU2614: DVU2614 - hypothetical protein (TIGR), at 2,732,473 to 2,733,090 DVU2614 DVU2615: DVU2615 - bacterial extracellular solute-binding protein, family 3 (TIGR), at 2,733,693 to 2,734,541 DVU2615 Position (kb) 2732 2733 2734Strain fitness (log2 ratio) -2 -1 0 1at 2731.519 kb on - strand, within DVU2612at 2731.533 kb on + strand, within DVU2612at 2731.710 kb on - strand, within DVU2612at 2731.822 kb on - strandat 2732.463 kb on + strandat 2732.471 kb on - strandat 2732.506 kb on - strandat 2733.061 kb on + strandat 2733.085 kb on + strandat 2733.085 kb on + strandat 2733.085 kb on + strandat 2733.085 kb on + strandat 2733.085 kb on + strandat 2733.093 kb on - strandat 2733.093 kb on - strandat 2733.093 kb on - strandat 2733.098 kb on + strandat 2733.129 kb on + strandat 2733.147 kb on + strandat 2733.185 kb on + strandat 2733.207 kb on + strandat 2733.220 kb on + strandat 2733.260 kb on + strandat 2733.260 kb on + strandat 2733.260 kb on + strandat 2733.357 kb on + strandat 2733.408 kb on + strandat 2733.418 kb on + strandat 2733.555 kb on - strandat 2733.562 kb on + strandat 2733.580 kb on + strandat 2733.592 kb on + strandat 2733.666 kb on + strandat 2733.791 kb on + strand, within DVU2615at 2733.844 kb on + strand, within DVU2615at 2733.855 kb on + strand, within DVU2615at 2733.855 kb on + strand, within DVU2615at 2733.863 kb on - strand, within DVU2615at 2733.957 kb on - strand, within DVU2615at 2733.957 kb on - strand, within DVU2615at 2734.008 kb on - strand, within DVU2615

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/1-20 mM)
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2,731,519 - DVU2612 0.32 -1.1
2,731,533 + DVU2612 0.35 -1.5
2,731,710 - DVU2612 0.81 -1.4
2,731,822 - -0.4
2,732,463 + -0.2
2,732,471 - +0.3
2,732,506 - -0.0
2,733,061 + -0.6
2,733,085 + +0.1
2,733,085 + +0.2
2,733,085 + -0.0
2,733,085 + +0.0
2,733,085 + -0.0
2,733,093 - -0.2
2,733,093 - +0.0
2,733,093 - -0.2
2,733,098 + -0.1
2,733,129 + +0.1
2,733,147 + +0.1
2,733,185 + -0.1
2,733,207 + -0.2
2,733,220 + +0.7
2,733,260 + +0.7
2,733,260 + -0.8
2,733,260 + -0.1
2,733,357 + -0.3
2,733,408 + -0.3
2,733,418 + +1.4
2,733,555 - -0.1
2,733,562 + -0.1
2,733,580 + +0.3
2,733,592 + -1.9
2,733,666 + +0.7
2,733,791 + DVU2615 0.12 -0.4
2,733,844 + DVU2615 0.18 -0.3
2,733,855 + DVU2615 0.19 -0.0
2,733,855 + DVU2615 0.19 +0.1
2,733,863 - DVU2615 0.20 -0.6
2,733,957 - DVU2615 0.31 -0.2
2,733,957 - DVU2615 0.31 -0.4
2,734,008 - DVU2615 0.37 +0.3

Or see this region's nucleotide sequence