Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.848.1 and Xcc-8004.849.1 are separated by 17 nucleotides Xcc-8004.849.1 and Xcc-8004.850.1 are separated by 246 nucleotides Xcc-8004.850.1 and Xcc-8004.852.1 are separated by 118 nucleotides
Xcc-8004.848.1: Xcc-8004.848.1 - Mobile element protein, at 799,480 to 800,334
Xcc-8004.848.1
Xcc-8004.849.1: Xcc-8004.849.1 - Mobile element protein, at 800,352 to 800,645
Xcc-8004.849.1
Xcc-8004.850.1: Xcc-8004.850.1 - ATP-dependent protease HslV (EC 3.4.25.-), at 800,892 to 801,671
Xcc-8004.850.1
Xcc-8004.852.1: Xcc-8004.852.1 - ATP-dependent hsl protease ATP-binding subunit HslU, at 801,790 to 803,157
Xcc-8004.852.1
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 800.667 kb on + strand at 800.667 kb on + strand at 800.885 kb on + strand at 800.885 kb on + strand at 800.887 kb on + strand at 800.887 kb on + strand at 800.982 kb on - strand, within Xcc-8004.850.1 at 800.982 kb on - strand, within Xcc-8004.850.1 at 801.020 kb on - strand, within Xcc-8004.850.1 at 801.027 kb on - strand, within Xcc-8004.850.1 at 801.228 kb on - strand, within Xcc-8004.850.1 at 801.284 kb on - strand, within Xcc-8004.850.1 at 801.537 kb on + strand, within Xcc-8004.850.1 at 801.537 kb on + strand, within Xcc-8004.850.1 at 801.538 kb on - strand, within Xcc-8004.850.1 at 801.636 kb on + strand at 801.636 kb on + strand at 801.637 kb on - strand at 801.772 kb on - strand at 801.796 kb on - strand at 801.799 kb on - strand at 802.075 kb on + strand, within Xcc-8004.852.1 at 802.120 kb on - strand, within Xcc-8004.852.1 at 802.415 kb on + strand, within Xcc-8004.852.1 at 802.416 kb on - strand, within Xcc-8004.852.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 800,667 + +0.1 800,667 + +0.4 800,885 + -0.1 800,885 + -2.1 800,887 + -2.9 800,887 + -0.6 800,982 - Xcc-8004.850.1 0.12 +2.6 800,982 - Xcc-8004.850.1 0.12 +0.3 801,020 - Xcc-8004.850.1 0.16 +0.0 801,027 - Xcc-8004.850.1 0.17 -0.7 801,228 - Xcc-8004.850.1 0.43 -3.6 801,284 - Xcc-8004.850.1 0.50 -3.4 801,537 + Xcc-8004.850.1 0.83 +0.7 801,537 + Xcc-8004.850.1 0.83 +0.5 801,538 - Xcc-8004.850.1 0.83 -2.0 801,636 + +0.8 801,636 + -2.3 801,637 - -1.6 801,772 - -0.7 801,796 - +1.3 801,799 - -1.1 802,075 + Xcc-8004.852.1 0.21 -0.9 802,120 - Xcc-8004.852.1 0.24 -2.1 802,415 + Xcc-8004.852.1 0.46 +1.7 802,416 - Xcc-8004.852.1 0.46 +2.8
Or see this region's nucleotide sequence