Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.787.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.786.1 and Xcc-8004.787.1 are separated by 30 nucleotidesXcc-8004.787.1 and Xcc-8004.788.1 are separated by 191 nucleotidesXcc-8004.788.1 and Xcc-8004.789.1 are separated by 161 nucleotides Xcc-8004.786.1: Xcc-8004.786.1 - FIG01210197: hypothetical protein, at 730,992 to 732,872 Xcc-8004.786.1 Xcc-8004.787.1: Xcc-8004.787.1 - Rrf2 family transcriptional regulator, group III, at 732,903 to 733,448 Xcc-8004.787.1 Xcc-8004.788.1: Xcc-8004.788.1 - Serine peptidase, at 733,640 to 733,978 Xcc-8004.788.1 Xcc-8004.789.1: Xcc-8004.789.1 - Thioredoxin reductase (EC 1.8.1.9), at 734,140 to 735,039 Xcc-8004.789.1 Position (kb) 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 732.100 kb on - strand, within Xcc-8004.786.1at 732.138 kb on - strand, within Xcc-8004.786.1at 732.464 kb on + strand, within Xcc-8004.786.1at 732.822 kb on + strandat 732.822 kb on + strandat 732.822 kb on + strandat 732.823 kb on - strandat 732.862 kb on - strandat 732.862 kb on - strandat 732.862 kb on - strandat 732.871 kb on - strandat 733.128 kb on + strand, within Xcc-8004.787.1at 733.435 kb on + strandat 733.571 kb on + strandat 733.571 kb on + strandat 733.572 kb on - strandat 733.572 kb on - strandat 733.630 kb on + strandat 733.630 kb on + strandat 733.631 kb on - strandat 733.631 kb on - strandat 733.631 kb on - strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.652 kb on + strandat 733.653 kb on - strandat 733.767 kb on - strand, within Xcc-8004.788.1at 733.767 kb on - strand, within Xcc-8004.788.1at 733.905 kb on + strand, within Xcc-8004.788.1at 733.905 kb on + strand, within Xcc-8004.788.1at 733.905 kb on + strand, within Xcc-8004.788.1at 733.958 kb on + strandat 733.958 kb on + strandat 733.959 kb on - strandat 733.959 kb on - strandat 733.959 kb on - strandat 733.959 kb on - strandat 734.146 kb on + strandat 734.147 kb on - strandat 734.147 kb on - strandat 734.174 kb on - strandat 734.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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732,100 - Xcc-8004.786.1 0.59 +0.3
732,138 - Xcc-8004.786.1 0.61 -0.9
732,464 + Xcc-8004.786.1 0.78 -0.3
732,822 + -1.1
732,822 + +0.2
732,822 + +0.4
732,823 - +0.5
732,862 - +0.1
732,862 - -0.6
732,862 - +1.7
732,871 - +2.8
733,128 + Xcc-8004.787.1 0.41 -0.9
733,435 + -1.0
733,571 + -1.6
733,571 + -0.2
733,572 - -2.2
733,572 - -1.0
733,630 + -1.5
733,630 + -2.4
733,631 - +1.0
733,631 - -1.9
733,631 - +2.0
733,652 + -2.8
733,652 + -1.3
733,652 + +2.1
733,653 - +1.5
733,767 - Xcc-8004.788.1 0.37 -0.1
733,767 - Xcc-8004.788.1 0.37 -2.5
733,905 + Xcc-8004.788.1 0.78 -0.0
733,905 + Xcc-8004.788.1 0.78 -0.1
733,905 + Xcc-8004.788.1 0.78 +1.9
733,958 + +1.7
733,958 + -1.3
733,959 - -0.8
733,959 - +0.1
733,959 - -1.7
733,959 - +1.7
734,146 + -0.8
734,147 - +1.7
734,147 - -0.6
734,174 - +1.4
734,174 - +0.4

Or see this region's nucleotide sequence