Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.723.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.720.1 and Xcc-8004.721.1 overlap by 4 nucleotidesXcc-8004.721.1 and Xcc-8004.722.1 overlap by 4 nucleotidesXcc-8004.722.1 and Xcc-8004.723.1 are separated by 189 nucleotidesXcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotides Xcc-8004.720.1: Xcc-8004.720.1 - putative iron-regulated membrane protein, at 669,886 to 671,508 Xcc-8004.720.1 Xcc-8004.721.1: Xcc-8004.721.1 - putative; ORF located using Glimmer/Genemark, at 671,505 to 671,825 Xcc-8004.721.1 Xcc-8004.722.1: Xcc-8004.722.1 - putative; ORF located using Glimmer/Genemark, at 671,822 to 672,172 Xcc-8004.722.1 Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175 Xcc-8004.723.1 Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799 Xcc-8004.724.1 Position (kb) 672 673 674 675 676Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 671.419 kb on + strandat 671.419 kb on + strandat 671.419 kb on + strandat 671.419 kb on + strandat 671.419 kb on + strandat 671.419 kb on + strandat 671.420 kb on - strandat 671.420 kb on - strandat 671.578 kb on + strand, within Xcc-8004.721.1at 671.579 kb on - strand, within Xcc-8004.721.1at 671.579 kb on - strand, within Xcc-8004.721.1at 671.697 kb on + strand, within Xcc-8004.721.1at 671.697 kb on + strand, within Xcc-8004.721.1at 671.697 kb on + strand, within Xcc-8004.721.1at 672.030 kb on + strand, within Xcc-8004.722.1at 672.030 kb on + strand, within Xcc-8004.722.1at 672.030 kb on + strand, within Xcc-8004.722.1at 672.083 kb on + strand, within Xcc-8004.722.1at 672.083 kb on + strand, within Xcc-8004.722.1at 672.084 kb on - strand, within Xcc-8004.722.1at 672.084 kb on - strand, within Xcc-8004.722.1at 672.196 kb on + strandat 672.282 kb on - strandat 672.492 kb on + strandat 672.696 kb on + strand, within Xcc-8004.723.1at 672.696 kb on + strand, within Xcc-8004.723.1at 672.696 kb on + strand, within Xcc-8004.723.1at 672.696 kb on + strand, within Xcc-8004.723.1at 672.697 kb on - strand, within Xcc-8004.723.1at 672.697 kb on - strand, within Xcc-8004.723.1at 672.893 kb on + strand, within Xcc-8004.723.1at 672.893 kb on + strand, within Xcc-8004.723.1at 672.894 kb on - strand, within Xcc-8004.723.1at 672.894 kb on - strand, within Xcc-8004.723.1at 672.894 kb on - strand, within Xcc-8004.723.1at 672.894 kb on - strand, within Xcc-8004.723.1at 672.899 kb on + strand, within Xcc-8004.723.1at 673.091 kb on + strand, within Xcc-8004.723.1at 673.091 kb on + strand, within Xcc-8004.723.1at 673.092 kb on - strand, within Xcc-8004.723.1at 673.092 kb on - strand, within Xcc-8004.723.1at 673.092 kb on - strand, within Xcc-8004.723.1at 673.124 kb on + strand, within Xcc-8004.723.1at 673.124 kb on + strand, within Xcc-8004.723.1at 673.124 kb on + strand, within Xcc-8004.723.1at 673.124 kb on + strand, within Xcc-8004.723.1at 673.124 kb on + strand, within Xcc-8004.723.1at 673.206 kb on - strand, within Xcc-8004.723.1at 673.361 kb on - strand, within Xcc-8004.723.1at 673.693 kb on + strand, within Xcc-8004.723.1at 673.958 kb on + strand, within Xcc-8004.723.1at 673.959 kb on - strand, within Xcc-8004.723.1at 674.052 kb on - strand, within Xcc-8004.723.1at 674.122 kb on + strand, within Xcc-8004.723.1at 674.255 kb on - strand, within Xcc-8004.723.1at 674.255 kb on - strand, within Xcc-8004.723.1at 674.432 kb on + strand, within Xcc-8004.723.1at 674.634 kb on - strand, within Xcc-8004.723.1at 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.289 kb on + strandat 675.290 kb on - strandat 675.326 kb on - strandat 675.330 kb on + strandat 675.396 kb on - strandat 675.396 kb on - strandat 675.396 kb on - strandat 675.421 kb on + strand, within Xcc-8004.724.1at 675.422 kb on - strand, within Xcc-8004.724.1at 675.424 kb on - strand, within Xcc-8004.724.1at 675.453 kb on + strand, within Xcc-8004.724.1at 675.454 kb on - strand, within Xcc-8004.724.1at 675.614 kb on + strand, within Xcc-8004.724.1at 675.615 kb on - strand, within Xcc-8004.724.1at 675.875 kb on - strand, within Xcc-8004.724.1at 675.953 kb on + strand, within Xcc-8004.724.1at 675.953 kb on + strand, within Xcc-8004.724.1at 676.067 kb on + strand, within Xcc-8004.724.1at 676.067 kb on + strand, within Xcc-8004.724.1at 676.068 kb on - strand, within Xcc-8004.724.1at 676.068 kb on - strand, within Xcc-8004.724.1at 676.146 kb on - strand, within Xcc-8004.724.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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671,419 + +1.6
671,419 + +0.7
671,419 + -2.9
671,419 + -0.9
671,419 + -1.2
671,419 + -2.9
671,420 - +0.4
671,420 - -1.3
671,578 + Xcc-8004.721.1 0.23 +1.5
671,579 - Xcc-8004.721.1 0.23 +0.8
671,579 - Xcc-8004.721.1 0.23 +0.2
671,697 + Xcc-8004.721.1 0.60 -2.1
671,697 + Xcc-8004.721.1 0.60 +0.4
671,697 + Xcc-8004.721.1 0.60 -2.6
672,030 + Xcc-8004.722.1 0.59 +1.8
672,030 + Xcc-8004.722.1 0.59 +0.9
672,030 + Xcc-8004.722.1 0.59 +1.0
672,083 + Xcc-8004.722.1 0.74 +1.1
672,083 + Xcc-8004.722.1 0.74 +1.7
672,084 - Xcc-8004.722.1 0.75 -0.8
672,084 - Xcc-8004.722.1 0.75 +1.6
672,196 + -1.5
672,282 - -2.5
672,492 + -1.6
672,696 + Xcc-8004.723.1 0.12 +2.3
672,696 + Xcc-8004.723.1 0.12 +0.3
672,696 + Xcc-8004.723.1 0.12 +1.0
672,696 + Xcc-8004.723.1 0.12 +1.7
672,697 - Xcc-8004.723.1 0.12 +0.5
672,697 - Xcc-8004.723.1 0.12 +0.7
672,893 + Xcc-8004.723.1 0.19 -3.2
672,893 + Xcc-8004.723.1 0.19 +0.1
672,894 - Xcc-8004.723.1 0.19 +0.2
672,894 - Xcc-8004.723.1 0.19 -0.3
672,894 - Xcc-8004.723.1 0.19 -0.4
672,894 - Xcc-8004.723.1 0.19 +0.0
672,899 + Xcc-8004.723.1 0.19 +2.0
673,091 + Xcc-8004.723.1 0.26 -0.6
673,091 + Xcc-8004.723.1 0.26 -2.6
673,092 - Xcc-8004.723.1 0.26 +0.6
673,092 - Xcc-8004.723.1 0.26 -0.1
673,092 - Xcc-8004.723.1 0.26 +1.4
673,124 + Xcc-8004.723.1 0.27 -2.7
673,124 + Xcc-8004.723.1 0.27 -1.0
673,124 + Xcc-8004.723.1 0.27 -1.9
673,124 + Xcc-8004.723.1 0.27 -0.0
673,124 + Xcc-8004.723.1 0.27 -2.2
673,206 - Xcc-8004.723.1 0.30 -0.4
673,361 - Xcc-8004.723.1 0.36 -0.2
673,693 + Xcc-8004.723.1 0.47 -2.9
673,958 + Xcc-8004.723.1 0.57 +0.3
673,959 - Xcc-8004.723.1 0.57 +0.8
674,052 - Xcc-8004.723.1 0.60 -2.4
674,122 + Xcc-8004.723.1 0.63 -0.0
674,255 - Xcc-8004.723.1 0.67 -2.5
674,255 - Xcc-8004.723.1 0.67 +2.0
674,432 + Xcc-8004.723.1 0.74 -0.4
674,634 - Xcc-8004.723.1 0.81 -0.4
675,289 + +1.2
675,289 + -0.3
675,289 + +0.2
675,289 + +3.1
675,289 + -1.2
675,290 - -0.6
675,326 - +0.6
675,330 + -0.9
675,396 - -0.6
675,396 - +0.8
675,396 - -0.6
675,421 + Xcc-8004.724.1 0.11 -0.3
675,422 - Xcc-8004.724.1 0.11 -0.6
675,424 - Xcc-8004.724.1 0.11 +1.2
675,453 + Xcc-8004.724.1 0.13 -0.9
675,454 - Xcc-8004.724.1 0.13 -1.7
675,614 + Xcc-8004.724.1 0.23 -2.3
675,615 - Xcc-8004.724.1 0.23 -1.6
675,875 - Xcc-8004.724.1 0.40 +0.2
675,953 + Xcc-8004.724.1 0.45 -1.9
675,953 + Xcc-8004.724.1 0.45 -2.4
676,067 + Xcc-8004.724.1 0.52 +1.2
676,067 + Xcc-8004.724.1 0.52 -0.2
676,068 - Xcc-8004.724.1 0.53 +1.3
676,068 - Xcc-8004.724.1 0.53 -1.4
676,146 - Xcc-8004.724.1 0.58 +0.3

Or see this region's nucleotide sequence