Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.69.1 and Xcc-8004.70.1 are separated by 66 nucleotides Xcc-8004.70.1 and Xcc-8004.71.1 overlap by 4 nucleotides Xcc-8004.71.1 and Xcc-8004.73.1 are separated by 325 nucleotides
Xcc-8004.69.1: Xcc-8004.69.1 - COG1272: Predicted membrane protein hemolysin III homolog, at 72,923 to 73,585
Xcc-8004.69.1
Xcc-8004.70.1: Xcc-8004.70.1 - putative; ORF located using Glimmer/Genemark, at 73,652 to 73,969
Xcc-8004.70.1
Xcc-8004.71.1: Xcc-8004.71.1 - hypothetical protein, at 73,966 to 74,343
Xcc-8004.71.1
Xcc-8004.73.1: Xcc-8004.73.1 - putative; ORF located using Glimmer/Genemark, at 74,669 to 75,382
Xcc-8004.73.1
Position (kb) 73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 72.688 kb on + strand at 72.688 kb on + strand at 72.689 kb on - strand at 72.719 kb on + strand at 72.720 kb on - strand at 72.720 kb on - strand at 72.956 kb on + strand at 72.956 kb on + strand at 72.956 kb on + strand at 72.956 kb on + strand at 72.957 kb on - strand at 72.957 kb on - strand at 72.957 kb on - strand at 73.088 kb on + strand, within Xcc-8004.69.1 at 73.089 kb on - strand, within Xcc-8004.69.1 at 73.130 kb on + strand, within Xcc-8004.69.1 at 73.130 kb on + strand, within Xcc-8004.69.1 at 73.130 kb on + strand, within Xcc-8004.69.1 at 73.130 kb on + strand, within Xcc-8004.69.1 at 73.131 kb on - strand, within Xcc-8004.69.1 at 73.131 kb on - strand, within Xcc-8004.69.1 at 73.211 kb on + strand, within Xcc-8004.69.1 at 73.211 kb on + strand, within Xcc-8004.69.1 at 73.212 kb on - strand, within Xcc-8004.69.1 at 73.308 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.349 kb on + strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.350 kb on - strand, within Xcc-8004.69.1 at 73.448 kb on + strand, within Xcc-8004.69.1 at 73.448 kb on + strand, within Xcc-8004.69.1 at 73.448 kb on + strand, within Xcc-8004.69.1 at 73.448 kb on + strand, within Xcc-8004.69.1 at 73.449 kb on - strand, within Xcc-8004.69.1 at 73.449 kb on - strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.469 kb on + strand, within Xcc-8004.69.1 at 73.470 kb on - strand, within Xcc-8004.69.1 at 73.470 kb on - strand, within Xcc-8004.69.1 at 73.470 kb on - strand, within Xcc-8004.69.1 at 73.470 kb on - strand, within Xcc-8004.69.1 at 73.490 kb on + strand, within Xcc-8004.69.1 at 73.490 kb on + strand, within Xcc-8004.69.1 at 73.491 kb on - strand, within Xcc-8004.69.1 at 73.491 kb on - strand, within Xcc-8004.69.1 at 73.583 kb on + strand at 73.583 kb on + strand at 73.584 kb on - strand at 73.584 kb on - strand at 73.615 kb on + strand at 73.616 kb on - strand at 73.616 kb on - strand at 73.616 kb on - strand at 73.631 kb on + strand at 73.653 kb on + strand at 73.653 kb on + strand at 73.654 kb on - strand at 73.654 kb on - strand at 73.654 kb on - strand at 73.654 kb on - strand at 73.654 kb on - strand at 73.654 kb on - strand at 73.697 kb on + strand, within Xcc-8004.70.1 at 73.697 kb on + strand, within Xcc-8004.70.1 at 73.697 kb on + strand, within Xcc-8004.70.1 at 73.698 kb on - strand, within Xcc-8004.70.1 at 73.737 kb on + strand, within Xcc-8004.70.1 at 73.738 kb on - strand, within Xcc-8004.70.1 at 73.749 kb on + strand, within Xcc-8004.70.1 at 73.749 kb on + strand, within Xcc-8004.70.1 at 73.749 kb on + strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.750 kb on - strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.803 kb on + strand, within Xcc-8004.70.1 at 73.804 kb on - strand, within Xcc-8004.70.1 at 73.804 kb on - strand, within Xcc-8004.70.1 at 73.804 kb on - strand, within Xcc-8004.70.1 at 73.804 kb on - strand, within Xcc-8004.70.1 at 73.804 kb on - strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.872 kb on + strand, within Xcc-8004.70.1 at 73.873 kb on - strand, within Xcc-8004.70.1 at 73.873 kb on - strand, within Xcc-8004.70.1 at 74.120 kb on + strand, within Xcc-8004.71.1 at 74.120 kb on + strand, within Xcc-8004.71.1 at 74.120 kb on + strand, within Xcc-8004.71.1 at 74.121 kb on - strand, within Xcc-8004.71.1 at 74.121 kb on - strand, within Xcc-8004.71.1 at 74.325 kb on + strand at 74.326 kb on - strand at 74.453 kb on + strand at 74.461 kb on - strand at 74.471 kb on - strand at 74.471 kb on - strand at 74.471 kb on - strand at 74.603 kb on + strand at 74.642 kb on + strand at 74.821 kb on - strand, within Xcc-8004.73.1 at 74.857 kb on - strand, within Xcc-8004.73.1 at 74.919 kb on + strand, within Xcc-8004.73.1 at 74.919 kb on + strand, within Xcc-8004.73.1 at 74.920 kb on - strand, within Xcc-8004.73.1 at 74.920 kb on - strand, within Xcc-8004.73.1 at 74.920 kb on - strand, within Xcc-8004.73.1 at 74.920 kb on - strand, within Xcc-8004.73.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 72,688 + +1.6 72,688 + -2.1 72,689 - -0.8 72,719 + +0.0 72,720 - +0.4 72,720 - -1.4 72,956 + -2.1 72,956 + -0.4 72,956 + -0.1 72,956 + -0.8 72,957 - -0.8 72,957 - -0.4 72,957 - +2.0 73,088 + Xcc-8004.69.1 0.25 -2.4 73,089 - Xcc-8004.69.1 0.25 +0.9 73,130 + Xcc-8004.69.1 0.31 -1.9 73,130 + Xcc-8004.69.1 0.31 -3.0 73,130 + Xcc-8004.69.1 0.31 -0.8 73,130 + Xcc-8004.69.1 0.31 -2.8 73,131 - Xcc-8004.69.1 0.31 -1.6 73,131 - Xcc-8004.69.1 0.31 -3.1 73,211 + Xcc-8004.69.1 0.43 -1.7 73,211 + Xcc-8004.69.1 0.43 +0.6 73,212 - Xcc-8004.69.1 0.44 -0.7 73,308 + Xcc-8004.69.1 0.58 +1.1 73,349 + Xcc-8004.69.1 0.64 -0.7 73,349 + Xcc-8004.69.1 0.64 -0.8 73,349 + Xcc-8004.69.1 0.64 +0.4 73,349 + Xcc-8004.69.1 0.64 +1.1 73,349 + Xcc-8004.69.1 0.64 -0.9 73,349 + Xcc-8004.69.1 0.64 +1.8 73,349 + Xcc-8004.69.1 0.64 +2.0 73,349 + Xcc-8004.69.1 0.64 -0.4 73,349 + Xcc-8004.69.1 0.64 +1.0 73,350 - Xcc-8004.69.1 0.64 +1.4 73,350 - Xcc-8004.69.1 0.64 -1.8 73,350 - Xcc-8004.69.1 0.64 +0.0 73,350 - Xcc-8004.69.1 0.64 -1.7 73,350 - Xcc-8004.69.1 0.64 -1.3 73,350 - Xcc-8004.69.1 0.64 -0.6 73,350 - Xcc-8004.69.1 0.64 -0.8 73,350 - Xcc-8004.69.1 0.64 +1.0 73,350 - Xcc-8004.69.1 0.64 +0.2 73,350 - Xcc-8004.69.1 0.64 +0.3 73,350 - Xcc-8004.69.1 0.64 -1.9 73,448 + Xcc-8004.69.1 0.79 -0.7 73,448 + Xcc-8004.69.1 0.79 -3.1 73,448 + Xcc-8004.69.1 0.79 -0.8 73,448 + Xcc-8004.69.1 0.79 -1.4 73,449 - Xcc-8004.69.1 0.79 +1.0 73,449 - Xcc-8004.69.1 0.79 +0.6 73,469 + Xcc-8004.69.1 0.82 +0.4 73,469 + Xcc-8004.69.1 0.82 -3.3 73,469 + Xcc-8004.69.1 0.82 -0.8 73,469 + Xcc-8004.69.1 0.82 -1.0 73,469 + Xcc-8004.69.1 0.82 +1.0 73,469 + Xcc-8004.69.1 0.82 +0.3 73,469 + Xcc-8004.69.1 0.82 -1.6 73,469 + Xcc-8004.69.1 0.82 +0.4 73,469 + Xcc-8004.69.1 0.82 +1.9 73,469 + Xcc-8004.69.1 0.82 +1.1 73,470 - Xcc-8004.69.1 0.83 +1.6 73,470 - Xcc-8004.69.1 0.83 +0.0 73,470 - Xcc-8004.69.1 0.83 +0.6 73,470 - Xcc-8004.69.1 0.83 -1.1 73,490 + Xcc-8004.69.1 0.86 +0.6 73,490 + Xcc-8004.69.1 0.86 +0.6 73,491 - Xcc-8004.69.1 0.86 -1.1 73,491 - Xcc-8004.69.1 0.86 +0.5 73,583 + +2.0 73,583 + -2.4 73,584 - -0.8 73,584 - +2.5 73,615 + +1.5 73,616 - -1.7 73,616 - -0.6 73,616 - +1.7 73,631 + +0.4 73,653 + +1.0 73,653 + +0.7 73,654 - -2.1 73,654 - +2.0 73,654 - -0.1 73,654 - -0.3 73,654 - -2.6 73,654 - -0.5 73,697 + Xcc-8004.70.1 0.14 -1.1 73,697 + Xcc-8004.70.1 0.14 -2.1 73,697 + Xcc-8004.70.1 0.14 +0.3 73,698 - Xcc-8004.70.1 0.14 -3.1 73,737 + Xcc-8004.70.1 0.27 -0.4 73,738 - Xcc-8004.70.1 0.27 -0.0 73,749 + Xcc-8004.70.1 0.31 +1.2 73,749 + Xcc-8004.70.1 0.31 +0.6 73,749 + Xcc-8004.70.1 0.31 -0.4 73,750 - Xcc-8004.70.1 0.31 +2.2 73,750 - Xcc-8004.70.1 0.31 -2.7 73,750 - Xcc-8004.70.1 0.31 +0.4 73,750 - Xcc-8004.70.1 0.31 +0.9 73,750 - Xcc-8004.70.1 0.31 -1.5 73,750 - Xcc-8004.70.1 0.31 -3.0 73,803 + Xcc-8004.70.1 0.47 +2.9 73,803 + Xcc-8004.70.1 0.47 -3.0 73,803 + Xcc-8004.70.1 0.47 +0.0 73,803 + Xcc-8004.70.1 0.47 -1.7 73,803 + Xcc-8004.70.1 0.47 -2.3 73,803 + Xcc-8004.70.1 0.47 -1.8 73,803 + Xcc-8004.70.1 0.47 -0.0 73,803 + Xcc-8004.70.1 0.47 -1.4 73,804 - Xcc-8004.70.1 0.48 -1.3 73,804 - Xcc-8004.70.1 0.48 -2.0 73,804 - Xcc-8004.70.1 0.48 -1.6 73,804 - Xcc-8004.70.1 0.48 +2.3 73,804 - Xcc-8004.70.1 0.48 -2.1 73,872 + Xcc-8004.70.1 0.69 -0.5 73,872 + Xcc-8004.70.1 0.69 +0.3 73,872 + Xcc-8004.70.1 0.69 +0.7 73,872 + Xcc-8004.70.1 0.69 +0.9 73,872 + Xcc-8004.70.1 0.69 +0.4 73,872 + Xcc-8004.70.1 0.69 -1.1 73,873 - Xcc-8004.70.1 0.69 +0.4 73,873 - Xcc-8004.70.1 0.69 +0.6 74,120 + Xcc-8004.71.1 0.41 -0.3 74,120 + Xcc-8004.71.1 0.41 +1.7 74,120 + Xcc-8004.71.1 0.41 -1.0 74,121 - Xcc-8004.71.1 0.41 -2.1 74,121 - Xcc-8004.71.1 0.41 +1.0 74,325 + -2.8 74,326 - +0.9 74,453 + -2.4 74,461 - +0.7 74,471 - -1.4 74,471 - -2.4 74,471 - -2.0 74,603 + +1.5 74,642 + -0.6 74,821 - Xcc-8004.73.1 0.21 +1.1 74,857 - Xcc-8004.73.1 0.26 -2.8 74,919 + Xcc-8004.73.1 0.35 -1.4 74,919 + Xcc-8004.73.1 0.35 +1.0 74,920 - Xcc-8004.73.1 0.35 +1.1 74,920 - Xcc-8004.73.1 0.35 -2.5 74,920 - Xcc-8004.73.1 0.35 -3.6 74,920 - Xcc-8004.73.1 0.35 -0.1
Or see this region's nucleotide sequence