Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.694.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.693.1 and Xcc-8004.694.1 are separated by 51 nucleotidesXcc-8004.694.1 and Xcc-8004.696.1 are separated by 190 nucleotides Xcc-8004.693.1: Xcc-8004.693.1 - FIG01210708: hypothetical protein, at 642,772 to 644,886 Xcc-8004.693.1 Xcc-8004.694.1: Xcc-8004.694.1 - hypothetical protein, at 644,938 to 645,069 Xcc-8004.694.1 Xcc-8004.696.1: Xcc-8004.696.1 - FIG01212883: hypothetical protein, at 645,260 to 647,416 Xcc-8004.696.1 Position (kb) 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 644.149 kb on + strand, within Xcc-8004.693.1at 644.150 kb on - strand, within Xcc-8004.693.1at 644.187 kb on - strand, within Xcc-8004.693.1at 644.231 kb on - strand, within Xcc-8004.693.1at 644.632 kb on + strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.633 kb on - strand, within Xcc-8004.693.1at 644.808 kb on + strandat 644.808 kb on + strandat 644.809 kb on - strandat 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 644.974 kb on - strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.041 kb on + strand, within Xcc-8004.694.1at 645.042 kb on - strand, within Xcc-8004.694.1at 645.103 kb on + strandat 645.103 kb on + strandat 645.103 kb on + strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.104 kb on - strandat 645.124 kb on - strandat 645.124 kb on - strandat 645.144 kb on + strandat 645.144 kb on + strandat 645.145 kb on - strandat 645.145 kb on - strandat 645.145 kb on - strandat 645.148 kb on + strandat 645.148 kb on + strandat 645.149 kb on - strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.169 kb on + strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.170 kb on - strandat 645.212 kb on + strandat 645.213 kb on - strandat 645.213 kb on - strandat 645.420 kb on + strandat 645.420 kb on + strandat 645.421 kb on - strandat 645.421 kb on - strandat 645.456 kb on + strandat 645.553 kb on + strand, within Xcc-8004.696.1at 645.553 kb on + strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.554 kb on - strand, within Xcc-8004.696.1at 645.649 kb on - strand, within Xcc-8004.696.1at 645.682 kb on + strand, within Xcc-8004.696.1at 645.683 kb on - strand, within Xcc-8004.696.1at 645.845 kb on + strand, within Xcc-8004.696.1at 645.881 kb on - strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.885 kb on + strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.886 kb on - strand, within Xcc-8004.696.1at 645.917 kb on + strand, within Xcc-8004.696.1at 645.917 kb on + strand, within Xcc-8004.696.1at 645.917 kb on + strand, within Xcc-8004.696.1at 645.918 kb on - strand, within Xcc-8004.696.1at 645.956 kb on + strand, within Xcc-8004.696.1at 645.956 kb on + strand, within Xcc-8004.696.1at 645.956 kb on + strand, within Xcc-8004.696.1at 645.957 kb on - strand, within Xcc-8004.696.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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644,149 + Xcc-8004.693.1 0.65 -1.2
644,150 - Xcc-8004.693.1 0.65 +1.0
644,187 - Xcc-8004.693.1 0.67 +2.2
644,231 - Xcc-8004.693.1 0.69 +0.4
644,632 + Xcc-8004.693.1 0.88 -0.8
644,633 - Xcc-8004.693.1 0.88 +0.5
644,633 - Xcc-8004.693.1 0.88 +0.4
644,633 - Xcc-8004.693.1 0.88 +1.2
644,808 + +1.1
644,808 + -0.2
644,809 - +2.4
644,974 - Xcc-8004.694.1 0.27 -1.9
644,974 - Xcc-8004.694.1 0.27 +2.7
644,974 - Xcc-8004.694.1 0.27 +3.6
644,974 - Xcc-8004.694.1 0.27 +0.4
645,041 + Xcc-8004.694.1 0.78 +0.3
645,041 + Xcc-8004.694.1 0.78 +0.0
645,041 + Xcc-8004.694.1 0.78 -1.3
645,042 - Xcc-8004.694.1 0.79 -2.7
645,103 + -0.6
645,103 + -2.0
645,103 + +4.9
645,104 - +0.7
645,104 - +1.2
645,104 - +0.6
645,104 - +1.0
645,124 - -0.1
645,124 - +0.1
645,144 + -1.0
645,144 + -1.6
645,145 - -2.5
645,145 - -2.2
645,145 - +1.5
645,148 + +1.9
645,148 + -0.2
645,149 - -0.4
645,169 + +2.3
645,169 + -2.0
645,169 + -1.0
645,169 + -1.7
645,170 - -0.1
645,170 - +1.3
645,170 - -1.6
645,170 - -0.3
645,170 - +0.0
645,212 + +0.9
645,213 - -0.0
645,213 - -2.1
645,420 + +1.9
645,420 + +0.7
645,421 - +1.1
645,421 - +0.9
645,456 + -1.7
645,553 + Xcc-8004.696.1 0.14 +1.2
645,553 + Xcc-8004.696.1 0.14 -2.6
645,554 - Xcc-8004.696.1 0.14 -0.3
645,554 - Xcc-8004.696.1 0.14 -0.4
645,554 - Xcc-8004.696.1 0.14 -2.7
645,554 - Xcc-8004.696.1 0.14 +1.3
645,554 - Xcc-8004.696.1 0.14 -2.1
645,649 - Xcc-8004.696.1 0.18 -0.4
645,682 + Xcc-8004.696.1 0.20 -1.3
645,683 - Xcc-8004.696.1 0.20 -1.2
645,845 + Xcc-8004.696.1 0.27 +0.8
645,881 - Xcc-8004.696.1 0.29 -1.7
645,885 + Xcc-8004.696.1 0.29 +0.2
645,885 + Xcc-8004.696.1 0.29 -0.7
645,885 + Xcc-8004.696.1 0.29 -0.3
645,885 + Xcc-8004.696.1 0.29 -1.1
645,885 + Xcc-8004.696.1 0.29 -0.4
645,885 + Xcc-8004.696.1 0.29 +0.3
645,885 + Xcc-8004.696.1 0.29 +1.3
645,885 + Xcc-8004.696.1 0.29 -3.0
645,886 - Xcc-8004.696.1 0.29 -1.2
645,886 - Xcc-8004.696.1 0.29 +1.0
645,886 - Xcc-8004.696.1 0.29 -0.5
645,886 - Xcc-8004.696.1 0.29 +3.6
645,886 - Xcc-8004.696.1 0.29 -1.1
645,886 - Xcc-8004.696.1 0.29 -1.4
645,886 - Xcc-8004.696.1 0.29 +1.8
645,917 + Xcc-8004.696.1 0.30 -0.7
645,917 + Xcc-8004.696.1 0.30 +1.9
645,917 + Xcc-8004.696.1 0.30 +0.6
645,918 - Xcc-8004.696.1 0.31 -0.2
645,956 + Xcc-8004.696.1 0.32 +0.1
645,956 + Xcc-8004.696.1 0.32 +1.1
645,956 + Xcc-8004.696.1 0.32 -1.3
645,957 - Xcc-8004.696.1 0.32 -2.6

Or see this region's nucleotide sequence