Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5037.1 and Xcc-8004.5038.1 overlap by 4 nucleotides Xcc-8004.5038.1 and Xcc-8004.5039.1 are separated by 31 nucleotides
Xcc-8004.5037.1: Xcc-8004.5037.1 - ABC-type Na+ efflux pump, permease component, at 4,778,004 to 4,779,197
Xcc-8004.5037.1
Xcc-8004.5038.1: Xcc-8004.5038.1 - ABC-type Na+ transport system, ATPase component, at 4,779,194 to 4,779,940
Xcc-8004.5038.1
Xcc-8004.5039.1: Xcc-8004.5039.1 - FIG032621: Hydrolase, alpha/beta hydrolase fold family, at 4,779,972 to 4,781,522
Xcc-8004.5039.1
Position (kb) 4779
4780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4778.235 kb on + strand, within Xcc-8004.5037.1 at 4778.235 kb on + strand, within Xcc-8004.5037.1 at 4778.235 kb on + strand, within Xcc-8004.5037.1 at 4778.235 kb on + strand, within Xcc-8004.5037.1 at 4778.299 kb on + strand, within Xcc-8004.5037.1 at 4778.299 kb on + strand, within Xcc-8004.5037.1 at 4778.300 kb on - strand, within Xcc-8004.5037.1 at 4778.300 kb on - strand, within Xcc-8004.5037.1 at 4778.300 kb on - strand, within Xcc-8004.5037.1 at 4778.300 kb on - strand, within Xcc-8004.5037.1 at 4778.300 kb on - strand, within Xcc-8004.5037.1 at 4778.752 kb on + strand, within Xcc-8004.5037.1 at 4778.880 kb on + strand, within Xcc-8004.5037.1 at 4778.880 kb on + strand, within Xcc-8004.5037.1 at 4779.148 kb on + strand at 4779.640 kb on - strand, within Xcc-8004.5038.1 at 4779.672 kb on + strand, within Xcc-8004.5038.1 at 4779.672 kb on + strand, within Xcc-8004.5038.1 at 4779.673 kb on - strand, within Xcc-8004.5038.1 at 4779.786 kb on + strand, within Xcc-8004.5038.1 at 4779.787 kb on - strand, within Xcc-8004.5038.1 at 4780.463 kb on - strand, within Xcc-8004.5039.1 at 4780.548 kb on + strand, within Xcc-8004.5039.1 at 4780.832 kb on - strand, within Xcc-8004.5039.1 at 4780.850 kb on + strand, within Xcc-8004.5039.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,778,235 + Xcc-8004.5037.1 0.19 +0.6 4,778,235 + Xcc-8004.5037.1 0.19 +2.1 4,778,235 + Xcc-8004.5037.1 0.19 +0.9 4,778,235 + Xcc-8004.5037.1 0.19 -1.9 4,778,299 + Xcc-8004.5037.1 0.25 -2.4 4,778,299 + Xcc-8004.5037.1 0.25 -4.2 4,778,300 - Xcc-8004.5037.1 0.25 +1.3 4,778,300 - Xcc-8004.5037.1 0.25 -0.6 4,778,300 - Xcc-8004.5037.1 0.25 +1.0 4,778,300 - Xcc-8004.5037.1 0.25 -2.6 4,778,300 - Xcc-8004.5037.1 0.25 -0.3 4,778,752 + Xcc-8004.5037.1 0.63 +0.0 4,778,880 + Xcc-8004.5037.1 0.73 -0.6 4,778,880 + Xcc-8004.5037.1 0.73 -2.2 4,779,148 + +0.0 4,779,640 - Xcc-8004.5038.1 0.60 +0.9 4,779,672 + Xcc-8004.5038.1 0.64 -1.7 4,779,672 + Xcc-8004.5038.1 0.64 +0.4 4,779,673 - Xcc-8004.5038.1 0.64 -3.1 4,779,786 + Xcc-8004.5038.1 0.79 -3.0 4,779,787 - Xcc-8004.5038.1 0.79 -1.9 4,780,463 - Xcc-8004.5039.1 0.32 +0.5 4,780,548 + Xcc-8004.5039.1 0.37 -2.9 4,780,832 - Xcc-8004.5039.1 0.55 +2.3 4,780,850 + Xcc-8004.5039.1 0.57 -0.6
Or see this region's nucleotide sequence