Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4916.1 and Xcc-8004.4917.1 are separated by 333 nucleotides Xcc-8004.4917.1 and Xcc-8004.4918.1 are separated by 10 nucleotides Xcc-8004.4918.1 and Xcc-8004.4919.1 are separated by 381 nucleotides
Xcc-8004.4916.1: Xcc-8004.4916.1 - MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein, at 4,676,290 to 4,677,810
Xcc-8004.4916.1
Xcc-8004.4917.1: Xcc-8004.4917.1 - outer membrane lipoprotein Blc, at 4,678,144 to 4,678,701
Xcc-8004.4917.1
Xcc-8004.4918.1: Xcc-8004.4918.1 - FIG01211357: hypothetical protein, at 4,678,712 to 4,678,888
Xcc-8004.4918.1
Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829
Xcc-8004.4919.1
Position (kb) 4678
4679 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4677.766 kb on + strand at 4677.792 kb on + strand at 4677.792 kb on + strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.793 kb on - strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.830 kb on + strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.831 kb on - strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.832 kb on + strand at 4677.833 kb on - strand at 4677.833 kb on - strand at 4677.939 kb on + strand at 4678.027 kb on - strand at 4678.027 kb on - strand at 4678.109 kb on - strand at 4678.109 kb on - strand at 4678.157 kb on + strand at 4678.157 kb on + strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.158 kb on - strand at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.244 kb on - strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.310 kb on + strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.311 kb on - strand, within Xcc-8004.4917.1 at 4678.321 kb on + strand, within Xcc-8004.4917.1 at 4678.492 kb on + strand, within Xcc-8004.4917.1 at 4678.493 kb on - strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.519 kb on + strand, within Xcc-8004.4917.1 at 4678.520 kb on - strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.555 kb on + strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.556 kb on - strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.609 kb on + strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.610 kb on - strand, within Xcc-8004.4917.1 at 4678.668 kb on + strand at 4678.668 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.713 kb on + strand at 4678.714 kb on - strand at 4678.714 kb on - strand at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.797 kb on + strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.798 kb on - strand, within Xcc-8004.4918.1 at 4678.965 kb on - strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.995 kb on + strand at 4678.996 kb on - strand at 4679.041 kb on - strand at 4679.092 kb on + strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.093 kb on - strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.172 kb on + strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.173 kb on - strand at 4679.345 kb on + strand at 4679.345 kb on + strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.346 kb on - strand at 4679.348 kb on + strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.349 kb on - strand at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.723 kb on + strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1 at 4679.724 kb on - strand, within Xcc-8004.4919.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,677,766 + +0.8 4,677,792 + +0.3 4,677,792 + +1.0 4,677,793 - +2.3 4,677,793 - -0.8 4,677,793 - -1.8 4,677,793 - -1.7 4,677,793 - +0.8 4,677,793 - -2.0 4,677,830 + -1.6 4,677,830 + +1.6 4,677,830 + -0.8 4,677,830 + +0.7 4,677,830 + +0.5 4,677,830 + +1.1 4,677,830 + +0.6 4,677,831 - -0.5 4,677,831 - -0.9 4,677,831 - +0.7 4,677,831 - +1.9 4,677,832 + -0.3 4,677,832 + -0.7 4,677,832 + -2.4 4,677,832 + -3.0 4,677,833 - -1.0 4,677,833 - +1.3 4,677,939 + -2.2 4,678,027 - +1.7 4,678,027 - +0.9 4,678,109 - +0.4 4,678,109 - -0.7 4,678,157 + -0.6 4,678,157 + -1.2 4,678,158 - -2.4 4,678,158 - -0.3 4,678,158 - -1.7 4,678,244 - Xcc-8004.4917.1 0.18 +0.1 4,678,244 - Xcc-8004.4917.1 0.18 +1.2 4,678,310 + Xcc-8004.4917.1 0.30 +0.0 4,678,310 + Xcc-8004.4917.1 0.30 -0.1 4,678,310 + Xcc-8004.4917.1 0.30 -3.3 4,678,310 + Xcc-8004.4917.1 0.30 -0.4 4,678,310 + Xcc-8004.4917.1 0.30 +2.1 4,678,310 + Xcc-8004.4917.1 0.30 -2.0 4,678,311 - Xcc-8004.4917.1 0.30 -1.4 4,678,311 - Xcc-8004.4917.1 0.30 +0.6 4,678,311 - Xcc-8004.4917.1 0.30 -1.2 4,678,311 - Xcc-8004.4917.1 0.30 +0.6 4,678,321 + Xcc-8004.4917.1 0.32 -2.0 4,678,492 + Xcc-8004.4917.1 0.62 +0.0 4,678,493 - Xcc-8004.4917.1 0.63 -2.8 4,678,519 + Xcc-8004.4917.1 0.67 -2.3 4,678,519 + Xcc-8004.4917.1 0.67 -1.2 4,678,519 + Xcc-8004.4917.1 0.67 -1.2 4,678,520 - Xcc-8004.4917.1 0.67 -0.3 4,678,555 + Xcc-8004.4917.1 0.74 +1.3 4,678,555 + Xcc-8004.4917.1 0.74 +1.1 4,678,555 + Xcc-8004.4917.1 0.74 -0.5 4,678,556 - Xcc-8004.4917.1 0.74 -1.2 4,678,556 - Xcc-8004.4917.1 0.74 +2.0 4,678,609 + Xcc-8004.4917.1 0.83 -0.1 4,678,609 + Xcc-8004.4917.1 0.83 -1.3 4,678,609 + Xcc-8004.4917.1 0.83 +0.6 4,678,609 + Xcc-8004.4917.1 0.83 -0.5 4,678,609 + Xcc-8004.4917.1 0.83 -3.4 4,678,609 + Xcc-8004.4917.1 0.83 +0.4 4,678,609 + Xcc-8004.4917.1 0.83 -0.2 4,678,609 + Xcc-8004.4917.1 0.83 -1.6 4,678,609 + Xcc-8004.4917.1 0.83 -1.7 4,678,610 - Xcc-8004.4917.1 0.84 -0.5 4,678,610 - Xcc-8004.4917.1 0.84 -1.2 4,678,610 - Xcc-8004.4917.1 0.84 +1.5 4,678,668 + +0.8 4,678,668 + -1.9 4,678,713 + -0.5 4,678,713 + +0.4 4,678,713 + +1.5 4,678,713 + -0.2 4,678,714 - -0.5 4,678,714 - -1.3 4,678,797 + Xcc-8004.4918.1 0.48 -2.0 4,678,797 + Xcc-8004.4918.1 0.48 +1.1 4,678,797 + Xcc-8004.4918.1 0.48 -0.6 4,678,797 + Xcc-8004.4918.1 0.48 -0.2 4,678,797 + Xcc-8004.4918.1 0.48 -3.7 4,678,797 + Xcc-8004.4918.1 0.48 -0.3 4,678,797 + Xcc-8004.4918.1 0.48 -0.4 4,678,797 + Xcc-8004.4918.1 0.48 -1.3 4,678,797 + Xcc-8004.4918.1 0.48 -0.6 4,678,797 + Xcc-8004.4918.1 0.48 +0.1 4,678,798 - Xcc-8004.4918.1 0.49 -0.8 4,678,798 - Xcc-8004.4918.1 0.49 -1.3 4,678,798 - Xcc-8004.4918.1 0.49 -2.6 4,678,798 - Xcc-8004.4918.1 0.49 +0.0 4,678,798 - Xcc-8004.4918.1 0.49 +0.4 4,678,798 - Xcc-8004.4918.1 0.49 -1.4 4,678,798 - Xcc-8004.4918.1 0.49 -0.8 4,678,798 - Xcc-8004.4918.1 0.49 +1.8 4,678,798 - Xcc-8004.4918.1 0.49 +1.2 4,678,798 - Xcc-8004.4918.1 0.49 -0.8 4,678,798 - Xcc-8004.4918.1 0.49 +1.5 4,678,965 - -0.5 4,678,995 + +0.6 4,678,995 + +1.1 4,678,995 + +0.7 4,678,996 - -1.2 4,679,041 - +0.0 4,679,092 + -2.2 4,679,093 - -2.7 4,679,093 - +0.5 4,679,093 - -3.2 4,679,093 - -1.9 4,679,093 - +0.1 4,679,172 + +1.5 4,679,172 + +0.8 4,679,172 + +0.9 4,679,172 + -0.3 4,679,172 + +2.0 4,679,172 + -1.6 4,679,172 + -1.3 4,679,172 + +0.4 4,679,173 - +0.9 4,679,173 - -0.9 4,679,173 - +0.3 4,679,173 - +0.6 4,679,345 + -0.8 4,679,345 + +1.4 4,679,346 - +0.7 4,679,346 - +0.7 4,679,346 - +0.2 4,679,346 - +1.9 4,679,346 - +1.4 4,679,348 + +1.0 4,679,349 - -0.0 4,679,349 - +0.6 4,679,349 - -2.9 4,679,723 + Xcc-8004.4919.1 0.29 +0.8 4,679,723 + Xcc-8004.4919.1 0.29 +0.6 4,679,723 + Xcc-8004.4919.1 0.29 -0.4 4,679,723 + Xcc-8004.4919.1 0.29 +0.6 4,679,724 - Xcc-8004.4919.1 0.29 -0.8 4,679,724 - Xcc-8004.4919.1 0.29 +0.1 4,679,724 - Xcc-8004.4919.1 0.29 -0.3 4,679,724 - Xcc-8004.4919.1 0.29 -2.6
Or see this region's nucleotide sequence