Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4907.1 and Xcc-8004.4908.1 are separated by 29 nucleotides Xcc-8004.4908.1 and Xcc-8004.4909.1 are separated by 690 nucleotides
Xcc-8004.4907.1: Xcc-8004.4907.1 - Enterobactin synthetase component F (EC 2.7.7.-), at 4,665,246 to 4,669,226
Xcc-8004.4907.1
Xcc-8004.4908.1: Xcc-8004.4908.1 - hypothetical protein, at 4,669,256 to 4,669,423
Xcc-8004.4908.1
Xcc-8004.4909.1: Xcc-8004.4909.1 - Biosynthetic arginine decarboxylase (EC 4.1.1.19), at 4,670,114 to 4,672,141
Xcc-8004.4909.1
Position (kb) 4669
4670 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4668.446 kb on - strand, within Xcc-8004.4907.1 at 4668.448 kb on + strand, within Xcc-8004.4907.1 at 4668.448 kb on + strand, within Xcc-8004.4907.1 at 4668.448 kb on + strand, within Xcc-8004.4907.1 at 4668.448 kb on + strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.449 kb on - strand, within Xcc-8004.4907.1 at 4668.451 kb on + strand, within Xcc-8004.4907.1 at 4668.451 kb on + strand, within Xcc-8004.4907.1 at 4668.451 kb on + strand, within Xcc-8004.4907.1 at 4668.451 kb on + strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.452 kb on - strand, within Xcc-8004.4907.1 at 4668.496 kb on + strand, within Xcc-8004.4907.1 at 4668.497 kb on - strand, within Xcc-8004.4907.1 at 4668.637 kb on + strand, within Xcc-8004.4907.1 at 4668.754 kb on + strand, within Xcc-8004.4907.1 at 4668.754 kb on + strand, within Xcc-8004.4907.1 at 4668.754 kb on + strand, within Xcc-8004.4907.1 at 4668.755 kb on - strand, within Xcc-8004.4907.1 at 4668.793 kb on + strand, within Xcc-8004.4907.1 at 4669.160 kb on + strand at 4669.318 kb on + strand, within Xcc-8004.4908.1 at 4669.318 kb on + strand, within Xcc-8004.4908.1 at 4669.319 kb on - strand, within Xcc-8004.4908.1 at 4669.466 kb on - strand at 4669.468 kb on + strand at 4669.560 kb on + strand at 4669.560 kb on + strand at 4669.560 kb on + strand at 4669.561 kb on - strand at 4669.566 kb on + strand at 4669.566 kb on + strand at 4669.566 kb on + strand at 4669.566 kb on + strand at 4669.576 kb on + strand at 4669.576 kb on + strand at 4669.576 kb on + strand at 4669.577 kb on - strand at 4669.577 kb on - strand at 4669.661 kb on + strand at 4669.734 kb on + strand at 4669.736 kb on + strand at 4669.736 kb on + strand at 4669.801 kb on - strand at 4669.801 kb on - strand at 4669.894 kb on + strand at 4669.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,668,446 - Xcc-8004.4907.1 0.80 +0.3 4,668,448 + Xcc-8004.4907.1 0.80 +0.4 4,668,448 + Xcc-8004.4907.1 0.80 -1.2 4,668,448 + Xcc-8004.4907.1 0.80 -1.2 4,668,448 + Xcc-8004.4907.1 0.80 -1.2 4,668,449 - Xcc-8004.4907.1 0.80 -2.5 4,668,449 - Xcc-8004.4907.1 0.80 +1.3 4,668,449 - Xcc-8004.4907.1 0.80 -1.2 4,668,449 - Xcc-8004.4907.1 0.80 -2.4 4,668,449 - Xcc-8004.4907.1 0.80 -2.4 4,668,449 - Xcc-8004.4907.1 0.80 +0.7 4,668,449 - Xcc-8004.4907.1 0.80 +0.9 4,668,449 - Xcc-8004.4907.1 0.80 +1.6 4,668,451 + Xcc-8004.4907.1 0.81 -0.5 4,668,451 + Xcc-8004.4907.1 0.81 -1.0 4,668,451 + Xcc-8004.4907.1 0.81 -1.7 4,668,451 + Xcc-8004.4907.1 0.81 -2.2 4,668,452 - Xcc-8004.4907.1 0.81 -0.2 4,668,452 - Xcc-8004.4907.1 0.81 +0.8 4,668,452 - Xcc-8004.4907.1 0.81 +0.9 4,668,452 - Xcc-8004.4907.1 0.81 -1.7 4,668,452 - Xcc-8004.4907.1 0.81 -0.2 4,668,452 - Xcc-8004.4907.1 0.81 -1.9 4,668,496 + Xcc-8004.4907.1 0.82 -0.9 4,668,497 - Xcc-8004.4907.1 0.82 +0.8 4,668,637 + Xcc-8004.4907.1 0.85 +1.2 4,668,754 + Xcc-8004.4907.1 0.88 -1.3 4,668,754 + Xcc-8004.4907.1 0.88 -0.6 4,668,754 + Xcc-8004.4907.1 0.88 -0.6 4,668,755 - Xcc-8004.4907.1 0.88 +0.5 4,668,793 + Xcc-8004.4907.1 0.89 +0.2 4,669,160 + -0.8 4,669,318 + Xcc-8004.4908.1 0.37 -0.9 4,669,318 + Xcc-8004.4908.1 0.37 -0.5 4,669,319 - Xcc-8004.4908.1 0.38 -2.1 4,669,466 - +0.5 4,669,468 + +0.9 4,669,560 + -0.1 4,669,560 + -2.5 4,669,560 + +1.8 4,669,561 - -1.0 4,669,566 + -1.0 4,669,566 + -1.9 4,669,566 + -2.7 4,669,566 + +1.0 4,669,576 + -1.1 4,669,576 + -2.8 4,669,576 + +0.4 4,669,577 - +2.2 4,669,577 - +0.8 4,669,661 + -0.4 4,669,734 + +2.7 4,669,736 + -2.2 4,669,736 + +0.8 4,669,801 - -0.4 4,669,801 - +0.1 4,669,894 + -2.9 4,669,966 - +0.2
Or see this region's nucleotide sequence