Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4846.1 and Xcc-8004.4847.1 are separated by 16 nucleotides Xcc-8004.4847.1 and Xcc-8004.4848.1 are separated by 323 nucleotides
Xcc-8004.4846.1: Xcc-8004.4846.1 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 4,609,064 to 4,610,047
Xcc-8004.4846.1
Xcc-8004.4847.1: Xcc-8004.4847.1 - FIG01209735: hypothetical protein, at 4,610,064 to 4,610,495
Xcc-8004.4847.1
Xcc-8004.4848.1: Xcc-8004.4848.1 - Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88), at 4,610,819 to 4,614,019
Xcc-8004.4848.1
Position (kb) 4610
4611 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4609.168 kb on + strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.169 kb on - strand, within Xcc-8004.4846.1 at 4609.336 kb on - strand, within Xcc-8004.4846.1 at 4609.336 kb on - strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.496 kb on + strand, within Xcc-8004.4846.1 at 4609.497 kb on - strand, within Xcc-8004.4846.1 at 4609.497 kb on - strand, within Xcc-8004.4846.1 at 4609.497 kb on - strand, within Xcc-8004.4846.1 at 4609.509 kb on + strand, within Xcc-8004.4846.1 at 4609.510 kb on - strand, within Xcc-8004.4846.1 at 4609.510 kb on - strand, within Xcc-8004.4846.1 at 4609.510 kb on - strand, within Xcc-8004.4846.1 at 4609.608 kb on + strand, within Xcc-8004.4846.1 at 4609.608 kb on + strand, within Xcc-8004.4846.1 at 4609.608 kb on + strand, within Xcc-8004.4846.1 at 4609.609 kb on - strand, within Xcc-8004.4846.1 at 4609.609 kb on - strand, within Xcc-8004.4846.1 at 4609.609 kb on - strand, within Xcc-8004.4846.1 at 4609.614 kb on + strand, within Xcc-8004.4846.1 at 4609.614 kb on + strand, within Xcc-8004.4846.1 at 4609.614 kb on + strand, within Xcc-8004.4846.1 at 4609.615 kb on - strand, within Xcc-8004.4846.1 at 4609.615 kb on - strand, within Xcc-8004.4846.1 at 4609.674 kb on + strand, within Xcc-8004.4846.1 at 4609.674 kb on + strand, within Xcc-8004.4846.1 at 4609.675 kb on - strand, within Xcc-8004.4846.1 at 4609.675 kb on - strand, within Xcc-8004.4846.1 at 4609.675 kb on - strand, within Xcc-8004.4846.1 at 4609.675 kb on - strand, within Xcc-8004.4846.1 at 4609.675 kb on - strand, within Xcc-8004.4846.1 at 4609.821 kb on + strand, within Xcc-8004.4846.1 at 4609.822 kb on - strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.890 kb on + strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4609.891 kb on - strand, within Xcc-8004.4846.1 at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.016 kb on + strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.017 kb on - strand at 4610.052 kb on + strand at 4610.052 kb on + strand at 4610.053 kb on - strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.060 kb on + strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.061 kb on - strand at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.108 kb on + strand, within Xcc-8004.4847.1 at 4610.109 kb on - strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.274 kb on + strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.275 kb on - strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.301 kb on + strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.302 kb on - strand, within Xcc-8004.4847.1 at 4610.529 kb on + strand at 4610.529 kb on + strand at 4610.530 kb on - strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.577 kb on + strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.578 kb on - strand at 4610.683 kb on + strand at 4610.683 kb on + strand at 4610.684 kb on - strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.786 kb on + strand at 4610.787 kb on - strand at 4610.787 kb on - strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.814 kb on + strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.815 kb on - strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.818 kb on + strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4610.819 kb on - strand at 4611.086 kb on + strand at 4611.086 kb on + strand at 4611.087 kb on - strand at 4611.087 kb on - strand at 4611.298 kb on + strand, within Xcc-8004.4848.1 at 4611.467 kb on + strand, within Xcc-8004.4848.1 at 4611.467 kb on + strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1 at 4611.468 kb on - strand, within Xcc-8004.4848.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,609,168 + Xcc-8004.4846.1 0.11 -2.4 4,609,169 - Xcc-8004.4846.1 0.11 -0.8 4,609,169 - Xcc-8004.4846.1 0.11 +0.0 4,609,169 - Xcc-8004.4846.1 0.11 +1.0 4,609,169 - Xcc-8004.4846.1 0.11 +0.1 4,609,169 - Xcc-8004.4846.1 0.11 -3.3 4,609,169 - Xcc-8004.4846.1 0.11 +1.1 4,609,336 - Xcc-8004.4846.1 0.28 -1.0 4,609,336 - Xcc-8004.4846.1 0.28 -1.9 4,609,496 + Xcc-8004.4846.1 0.44 +0.5 4,609,496 + Xcc-8004.4846.1 0.44 +2.2 4,609,496 + Xcc-8004.4846.1 0.44 -2.4 4,609,496 + Xcc-8004.4846.1 0.44 -2.2 4,609,496 + Xcc-8004.4846.1 0.44 -0.6 4,609,496 + Xcc-8004.4846.1 0.44 -2.4 4,609,496 + Xcc-8004.4846.1 0.44 +1.4 4,609,497 - Xcc-8004.4846.1 0.44 +1.0 4,609,497 - Xcc-8004.4846.1 0.44 -0.3 4,609,497 - Xcc-8004.4846.1 0.44 +1.1 4,609,509 + Xcc-8004.4846.1 0.45 -0.5 4,609,510 - Xcc-8004.4846.1 0.45 +2.0 4,609,510 - Xcc-8004.4846.1 0.45 +0.8 4,609,510 - Xcc-8004.4846.1 0.45 -0.3 4,609,608 + Xcc-8004.4846.1 0.55 -0.4 4,609,608 + Xcc-8004.4846.1 0.55 +0.9 4,609,608 + Xcc-8004.4846.1 0.55 +1.2 4,609,609 - Xcc-8004.4846.1 0.55 +0.4 4,609,609 - Xcc-8004.4846.1 0.55 +1.1 4,609,609 - Xcc-8004.4846.1 0.55 -3.7 4,609,614 + Xcc-8004.4846.1 0.56 +1.9 4,609,614 + Xcc-8004.4846.1 0.56 +1.8 4,609,614 + Xcc-8004.4846.1 0.56 +1.0 4,609,615 - Xcc-8004.4846.1 0.56 +1.0 4,609,615 - Xcc-8004.4846.1 0.56 +0.3 4,609,674 + Xcc-8004.4846.1 0.62 -1.8 4,609,674 + Xcc-8004.4846.1 0.62 -0.8 4,609,675 - Xcc-8004.4846.1 0.62 -1.1 4,609,675 - Xcc-8004.4846.1 0.62 +0.9 4,609,675 - Xcc-8004.4846.1 0.62 +1.7 4,609,675 - Xcc-8004.4846.1 0.62 -3.2 4,609,675 - Xcc-8004.4846.1 0.62 +1.5 4,609,821 + Xcc-8004.4846.1 0.77 +1.5 4,609,822 - Xcc-8004.4846.1 0.77 +0.9 4,609,890 + Xcc-8004.4846.1 0.84 +1.4 4,609,890 + Xcc-8004.4846.1 0.84 -1.2 4,609,890 + Xcc-8004.4846.1 0.84 -1.0 4,609,890 + Xcc-8004.4846.1 0.84 +1.2 4,609,890 + Xcc-8004.4846.1 0.84 -1.3 4,609,891 - Xcc-8004.4846.1 0.84 -2.3 4,609,891 - Xcc-8004.4846.1 0.84 +1.3 4,609,891 - Xcc-8004.4846.1 0.84 +0.6 4,609,891 - Xcc-8004.4846.1 0.84 -0.0 4,610,016 + -2.7 4,610,016 + -2.5 4,610,016 + -0.3 4,610,016 + +1.6 4,610,017 - +0.5 4,610,017 - -2.3 4,610,017 - +0.3 4,610,017 - +0.2 4,610,017 - -0.3 4,610,052 + -0.2 4,610,052 + +2.1 4,610,053 - -1.1 4,610,060 + -0.3 4,610,060 + +0.8 4,610,060 + +1.2 4,610,060 + +0.1 4,610,060 + +0.3 4,610,060 + +2.9 4,610,060 + +2.2 4,610,060 + -1.3 4,610,060 + +3.3 4,610,061 - +0.4 4,610,061 - -1.3 4,610,061 - -1.3 4,610,061 - +0.4 4,610,061 - -0.6 4,610,061 - +0.7 4,610,061 - -0.4 4,610,061 - +1.0 4,610,061 - -1.4 4,610,108 + Xcc-8004.4847.1 0.10 +2.8 4,610,108 + Xcc-8004.4847.1 0.10 +1.0 4,610,108 + Xcc-8004.4847.1 0.10 +1.4 4,610,109 - Xcc-8004.4847.1 0.10 +0.2 4,610,274 + Xcc-8004.4847.1 0.49 +1.2 4,610,274 + Xcc-8004.4847.1 0.49 +2.1 4,610,274 + Xcc-8004.4847.1 0.49 -1.4 4,610,274 + Xcc-8004.4847.1 0.49 +0.6 4,610,274 + Xcc-8004.4847.1 0.49 +1.8 4,610,274 + Xcc-8004.4847.1 0.49 +1.0 4,610,274 + Xcc-8004.4847.1 0.49 -1.0 4,610,274 + Xcc-8004.4847.1 0.49 +0.4 4,610,274 + Xcc-8004.4847.1 0.49 -0.1 4,610,275 - Xcc-8004.4847.1 0.49 +2.4 4,610,275 - Xcc-8004.4847.1 0.49 -0.1 4,610,275 - Xcc-8004.4847.1 0.49 +0.4 4,610,275 - Xcc-8004.4847.1 0.49 -1.9 4,610,301 + Xcc-8004.4847.1 0.55 +0.3 4,610,301 + Xcc-8004.4847.1 0.55 +0.6 4,610,301 + Xcc-8004.4847.1 0.55 +1.7 4,610,302 - Xcc-8004.4847.1 0.55 -1.4 4,610,302 - Xcc-8004.4847.1 0.55 -2.4 4,610,302 - Xcc-8004.4847.1 0.55 -2.4 4,610,529 + +0.5 4,610,529 + -0.6 4,610,530 - -0.4 4,610,577 + +1.2 4,610,577 + -1.2 4,610,577 + +0.3 4,610,577 + +2.1 4,610,578 - -0.4 4,610,578 - +0.1 4,610,578 - +2.0 4,610,578 - +0.1 4,610,683 + +2.5 4,610,683 + -2.5 4,610,684 - -0.3 4,610,786 + -1.5 4,610,786 + +0.0 4,610,786 + -0.4 4,610,786 + -1.0 4,610,786 + +0.8 4,610,786 + +3.4 4,610,786 + -0.6 4,610,786 + +1.3 4,610,787 - +2.1 4,610,787 - +1.2 4,610,814 + +0.3 4,610,814 + +2.5 4,610,814 + -1.1 4,610,814 + -0.2 4,610,814 + -1.6 4,610,814 + +0.9 4,610,815 - -0.8 4,610,815 - -0.6 4,610,815 - +1.0 4,610,815 - -1.0 4,610,815 - -0.6 4,610,815 - -0.6 4,610,815 - -3.9 4,610,818 + -1.7 4,610,818 + -0.7 4,610,818 + +0.5 4,610,818 + -0.5 4,610,818 + +0.8 4,610,818 + +3.0 4,610,818 + +0.1 4,610,818 + -0.6 4,610,818 + +0.8 4,610,818 + -0.4 4,610,819 - +1.6 4,610,819 - -2.6 4,610,819 - -2.6 4,610,819 - -0.5 4,610,819 - +1.7 4,610,819 - +0.6 4,610,819 - -2.4 4,611,086 + +0.8 4,611,086 + +1.3 4,611,087 - -0.6 4,611,087 - -1.1 4,611,298 + Xcc-8004.4848.1 0.15 +1.1 4,611,467 + Xcc-8004.4848.1 0.20 +1.3 4,611,467 + Xcc-8004.4848.1 0.20 -1.2 4,611,468 - Xcc-8004.4848.1 0.20 +0.1 4,611,468 - Xcc-8004.4848.1 0.20 +0.8 4,611,468 - Xcc-8004.4848.1 0.20 +2.1 4,611,468 - Xcc-8004.4848.1 0.20 +0.5
Or see this region's nucleotide sequence