Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.481.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.480.1 and Xcc-8004.481.1 are separated by 9 nucleotidesXcc-8004.481.1 and Xcc-8004.482.1 are separated by 27 nucleotidesXcc-8004.482.1 and Xcc-8004.483.1 are separated by 485 nucleotides Xcc-8004.480.1: Xcc-8004.480.1 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 442,664 to 444,025 Xcc-8004.480.1 Xcc-8004.481.1: Xcc-8004.481.1 - Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24), at 444,035 to 444,817 Xcc-8004.481.1 Xcc-8004.482.1: Xcc-8004.482.1 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 444,845 to 445,249 Xcc-8004.482.1 Xcc-8004.483.1: Xcc-8004.483.1 - Hydrolase, at 445,735 to 446,661 Xcc-8004.483.1 Position (kb) 444 445Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 443.152 kb on - strand, within Xcc-8004.480.1at 443.222 kb on - strand, within Xcc-8004.480.1at 443.323 kb on + strand, within Xcc-8004.480.1at 443.323 kb on + strand, within Xcc-8004.480.1at 443.323 kb on + strand, within Xcc-8004.480.1at 443.324 kb on - strand, within Xcc-8004.480.1at 443.778 kb on - strand, within Xcc-8004.480.1at 443.834 kb on - strand, within Xcc-8004.480.1at 443.834 kb on - strand, within Xcc-8004.480.1at 444.556 kb on - strand, within Xcc-8004.481.1at 444.556 kb on - strand, within Xcc-8004.481.1at 444.575 kb on + strand, within Xcc-8004.481.1at 444.576 kb on - strand, within Xcc-8004.481.1at 444.576 kb on - strand, within Xcc-8004.481.1at 444.576 kb on - strand, within Xcc-8004.481.1at 444.707 kb on + strand, within Xcc-8004.481.1at 444.707 kb on + strand, within Xcc-8004.481.1at 444.729 kb on - strand, within Xcc-8004.481.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.134 kb on + strand, within Xcc-8004.482.1at 445.154 kb on + strand, within Xcc-8004.482.1at 445.155 kb on - strand, within Xcc-8004.482.1at 445.155 kb on - strand, within Xcc-8004.482.1at 445.300 kb on - strandat 445.497 kb on + strandat 445.686 kb on + strandat 445.687 kb on - strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.742 kb on + strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.743 kb on - strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.776 kb on + strandat 445.777 kb on - strandat 445.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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443,152 - Xcc-8004.480.1 0.36 -1.1
443,222 - Xcc-8004.480.1 0.41 +3.0
443,323 + Xcc-8004.480.1 0.48 -1.8
443,323 + Xcc-8004.480.1 0.48 -2.8
443,323 + Xcc-8004.480.1 0.48 -1.2
443,324 - Xcc-8004.480.1 0.48 +1.0
443,778 - Xcc-8004.480.1 0.82 +1.1
443,834 - Xcc-8004.480.1 0.86 -3.3
443,834 - Xcc-8004.480.1 0.86 -2.7
444,556 - Xcc-8004.481.1 0.67 +1.0
444,556 - Xcc-8004.481.1 0.67 +1.8
444,575 + Xcc-8004.481.1 0.69 -2.7
444,576 - Xcc-8004.481.1 0.69 +1.3
444,576 - Xcc-8004.481.1 0.69 -0.5
444,576 - Xcc-8004.481.1 0.69 +1.4
444,707 + Xcc-8004.481.1 0.86 +1.1
444,707 + Xcc-8004.481.1 0.86 +0.5
444,729 - Xcc-8004.481.1 0.89 -0.8
445,134 + Xcc-8004.482.1 0.71 -3.9
445,134 + Xcc-8004.482.1 0.71 -1.4
445,134 + Xcc-8004.482.1 0.71 -1.6
445,134 + Xcc-8004.482.1 0.71 -2.7
445,154 + Xcc-8004.482.1 0.76 -1.1
445,155 - Xcc-8004.482.1 0.77 -1.6
445,155 - Xcc-8004.482.1 0.77 -0.1
445,300 - +0.7
445,497 + -0.2
445,686 + -1.3
445,687 - -2.4
445,742 + -0.6
445,742 + -1.6
445,742 + +0.6
445,742 + -0.8
445,742 + -0.7
445,743 - -1.5
445,743 - +1.7
445,743 - +1.0
445,743 - +1.0
445,743 - -0.0
445,743 - -1.6
445,743 - -0.3
445,776 + +1.0
445,776 + -1.3
445,776 + +1.2
445,776 + -0.8
445,777 - -0.4
445,777 - -0.0

Or see this region's nucleotide sequence