Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4697.1 and Xcc-8004.4698.1 overlap by 23 nucleotides Xcc-8004.4698.1 and Xcc-8004.4699.1 overlap by 4 nucleotides Xcc-8004.4699.1 and Xcc-8004.4700.1 overlap by 4 nucleotides
Xcc-8004.4697.1: Xcc-8004.4697.1 - FIG01210654: hypothetical protein, at 4,472,534 to 4,473,268
Xcc-8004.4697.1
Xcc-8004.4698.1: Xcc-8004.4698.1 - Methyl-accepting chemotaxis protein, at 4,473,246 to 4,475,936
Xcc-8004.4698.1
Xcc-8004.4699.1: Xcc-8004.4699.1 - Flagellar motor protein, at 4,475,933 to 4,476,580
Xcc-8004.4699.1
Xcc-8004.4700.1: Xcc-8004.4700.1 - FIG01210206: hypothetical protein, at 4,476,577 to 4,477,290
Xcc-8004.4700.1
Position (kb) 4473
4474
4475
4476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4472.507 kb on + strand at 4472.879 kb on + strand, within Xcc-8004.4697.1 at 4472.879 kb on + strand, within Xcc-8004.4697.1 at 4472.900 kb on + strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1 at 4472.901 kb on - strand, within Xcc-8004.4697.1 at 4473.266 kb on + strand at 4473.405 kb on + strand at 4473.405 kb on + strand at 4473.405 kb on + strand at 4473.429 kb on + strand at 4473.604 kb on + strand, within Xcc-8004.4698.1 at 4473.882 kb on + strand, within Xcc-8004.4698.1 at 4473.883 kb on - strand, within Xcc-8004.4698.1 at 4473.883 kb on - strand, within Xcc-8004.4698.1 at 4474.063 kb on - strand, within Xcc-8004.4698.1 at 4475.141 kb on + strand, within Xcc-8004.4698.1 at 4475.141 kb on + strand, within Xcc-8004.4698.1 at 4475.142 kb on - strand, within Xcc-8004.4698.1 at 4475.817 kb on + strand at 4475.817 kb on + strand at 4475.817 kb on + strand at 4475.817 kb on + strand at 4475.817 kb on + strand at 4475.818 kb on - strand at 4475.818 kb on - strand at 4475.818 kb on - strand at 4476.285 kb on - strand, within Xcc-8004.4699.1 at 4476.362 kb on + strand, within Xcc-8004.4699.1 at 4476.563 kb on - strand at 4476.754 kb on + strand, within Xcc-8004.4700.1 at 4476.755 kb on - strand, within Xcc-8004.4700.1 at 4476.794 kb on + strand, within Xcc-8004.4700.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,472,507 + -2.8 4,472,879 + Xcc-8004.4697.1 0.47 -1.8 4,472,879 + Xcc-8004.4697.1 0.47 -3.5 4,472,900 + Xcc-8004.4697.1 0.50 +0.1 4,472,901 - Xcc-8004.4697.1 0.50 -1.1 4,472,901 - Xcc-8004.4697.1 0.50 +0.3 4,472,901 - Xcc-8004.4697.1 0.50 -1.2 4,473,266 + -1.1 4,473,405 + -1.6 4,473,405 + -0.9 4,473,405 + -0.4 4,473,429 + -0.3 4,473,604 + Xcc-8004.4698.1 0.13 -0.1 4,473,882 + Xcc-8004.4698.1 0.24 -1.8 4,473,883 - Xcc-8004.4698.1 0.24 -0.7 4,473,883 - Xcc-8004.4698.1 0.24 -2.0 4,474,063 - Xcc-8004.4698.1 0.30 -0.7 4,475,141 + Xcc-8004.4698.1 0.70 -3.0 4,475,141 + Xcc-8004.4698.1 0.70 +0.4 4,475,142 - Xcc-8004.4698.1 0.70 -1.9 4,475,817 + +0.0 4,475,817 + -1.0 4,475,817 + +0.9 4,475,817 + -0.9 4,475,817 + -1.7 4,475,818 - -1.9 4,475,818 - +0.1 4,475,818 - -1.7 4,476,285 - Xcc-8004.4699.1 0.54 -2.8 4,476,362 + Xcc-8004.4699.1 0.66 -2.9 4,476,563 - +3.9 4,476,754 + Xcc-8004.4700.1 0.25 +0.5 4,476,755 - Xcc-8004.4700.1 0.25 -1.1 4,476,794 + Xcc-8004.4700.1 0.30 +1.3
Or see this region's nucleotide sequence