Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4439.1 and Xcc-8004.4440.1 are separated by 334 nucleotides Xcc-8004.4440.1 and Xcc-8004.4441.1 are separated by 251 nucleotides
Xcc-8004.4439.1: Xcc-8004.4439.1 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 4,252,150 to 4,256,193
Xcc-8004.4439.1
Xcc-8004.4440.1: Xcc-8004.4440.1 - Thiol:disulfide interchange protein DsbC, at 4,256,528 to 4,257,322
Xcc-8004.4440.1
Xcc-8004.4441.1: Xcc-8004.4441.1 - Tyrosine recombinase XerD, at 4,257,574 to 4,258,545
Xcc-8004.4441.1
Position (kb) 4256
4257
4258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4255.656 kb on - strand, within Xcc-8004.4439.1 at 4255.976 kb on + strand at 4255.976 kb on + strand at 4255.977 kb on - strand at 4255.977 kb on - strand at 4255.977 kb on - strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.084 kb on + strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.085 kb on - strand at 4256.229 kb on + strand at 4256.230 kb on - strand at 4256.230 kb on - strand at 4256.230 kb on - strand at 4256.230 kb on - strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.234 kb on + strand at 4256.235 kb on - strand at 4256.312 kb on + strand at 4256.312 kb on + strand at 4256.312 kb on + strand at 4256.312 kb on + strand at 4256.313 kb on - strand at 4256.313 kb on - strand at 4256.313 kb on - strand at 4256.384 kb on - strand at 4256.384 kb on - strand at 4256.384 kb on - strand at 4256.598 kb on + strand at 4256.598 kb on + strand at 4256.598 kb on + strand at 4256.599 kb on - strand at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.673 kb on + strand, within Xcc-8004.4440.1 at 4256.674 kb on - strand, within Xcc-8004.4440.1 at 4256.674 kb on - strand, within Xcc-8004.4440.1 at 4256.674 kb on - strand, within Xcc-8004.4440.1 at 4256.674 kb on - strand, within Xcc-8004.4440.1 at 4256.674 kb on - strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.826 kb on + strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.827 kb on - strand, within Xcc-8004.4440.1 at 4256.886 kb on + strand, within Xcc-8004.4440.1 at 4256.922 kb on + strand, within Xcc-8004.4440.1 at 4256.922 kb on + strand, within Xcc-8004.4440.1 at 4256.922 kb on + strand, within Xcc-8004.4440.1 at 4256.922 kb on + strand, within Xcc-8004.4440.1 at 4256.922 kb on + strand, within Xcc-8004.4440.1 at 4256.923 kb on - strand, within Xcc-8004.4440.1 at 4256.923 kb on - strand, within Xcc-8004.4440.1 at 4256.923 kb on - strand, within Xcc-8004.4440.1 at 4256.991 kb on + strand, within Xcc-8004.4440.1 at 4256.992 kb on - strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.081 kb on + strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.082 kb on - strand, within Xcc-8004.4440.1 at 4257.141 kb on + strand, within Xcc-8004.4440.1 at 4257.141 kb on + strand, within Xcc-8004.4440.1 at 4257.141 kb on + strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.142 kb on - strand, within Xcc-8004.4440.1 at 4257.277 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.318 kb on + strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.319 kb on - strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.487 kb on + strand at 4257.488 kb on - strand at 4257.488 kb on - strand at 4257.488 kb on - strand at 4257.488 kb on - strand at 4257.488 kb on - strand at 4257.488 kb on - strand at 4257.522 kb on + strand at 4257.522 kb on + strand at 4257.522 kb on + strand at 4257.523 kb on - strand at 4257.523 kb on - strand at 4257.523 kb on - strand at 4257.635 kb on + strand at 4257.635 kb on + strand at 4257.636 kb on - strand at 4257.636 kb on - strand at 4257.782 kb on + strand, within Xcc-8004.4441.1 at 4257.782 kb on + strand, within Xcc-8004.4441.1 at 4257.783 kb on - strand, within Xcc-8004.4441.1 at 4257.914 kb on + strand, within Xcc-8004.4441.1 at 4257.914 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.061 kb on + strand, within Xcc-8004.4441.1 at 4258.062 kb on - strand, within Xcc-8004.4441.1 at 4258.062 kb on - strand, within Xcc-8004.4441.1 at 4258.241 kb on + strand, within Xcc-8004.4441.1 at 4258.242 kb on - strand, within Xcc-8004.4441.1 at 4258.242 kb on - strand, within Xcc-8004.4441.1 at 4258.289 kb on + strand, within Xcc-8004.4441.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 4,255,656 - Xcc-8004.4439.1 0.87 +0.1 4,255,976 + +0.6 4,255,976 + -1.4 4,255,977 - -0.1 4,255,977 - -0.2 4,255,977 - +0.2 4,256,084 + -0.3 4,256,084 + -1.2 4,256,084 + -1.9 4,256,084 + -1.3 4,256,084 + +2.3 4,256,084 + -2.2 4,256,084 + +0.0 4,256,084 + -0.4 4,256,084 + +0.6 4,256,084 + +0.8 4,256,084 + -2.3 4,256,084 + +0.3 4,256,084 + +1.6 4,256,084 + +0.3 4,256,085 - +0.5 4,256,085 - -0.0 4,256,085 - -1.5 4,256,085 - +0.1 4,256,085 - -0.3 4,256,085 - -0.2 4,256,085 - -1.4 4,256,085 - -1.5 4,256,085 - -1.5 4,256,085 - -2.7 4,256,085 - +0.7 4,256,229 + +1.5 4,256,230 - -1.6 4,256,230 - +0.8 4,256,230 - -2.3 4,256,230 - +0.5 4,256,234 + +1.5 4,256,234 + +1.4 4,256,234 + -1.3 4,256,234 + +0.4 4,256,234 + +2.1 4,256,234 + -2.1 4,256,234 + -1.6 4,256,235 - +0.2 4,256,312 + -0.6 4,256,312 + -2.0 4,256,312 + -2.6 4,256,312 + +0.0 4,256,313 - -0.7 4,256,313 - +2.4 4,256,313 - +1.7 4,256,384 - +0.6 4,256,384 - +0.5 4,256,384 - -1.2 4,256,598 + +0.5 4,256,598 + -0.7 4,256,598 + -0.5 4,256,599 - -1.8 4,256,673 + Xcc-8004.4440.1 0.18 +0.1 4,256,673 + Xcc-8004.4440.1 0.18 -3.1 4,256,673 + Xcc-8004.4440.1 0.18 -0.5 4,256,673 + Xcc-8004.4440.1 0.18 -0.3 4,256,673 + Xcc-8004.4440.1 0.18 +0.8 4,256,673 + Xcc-8004.4440.1 0.18 -1.2 4,256,673 + Xcc-8004.4440.1 0.18 -1.3 4,256,673 + Xcc-8004.4440.1 0.18 -1.6 4,256,674 - Xcc-8004.4440.1 0.18 +0.3 4,256,674 - Xcc-8004.4440.1 0.18 -0.9 4,256,674 - Xcc-8004.4440.1 0.18 -0.9 4,256,674 - Xcc-8004.4440.1 0.18 -0.8 4,256,674 - Xcc-8004.4440.1 0.18 +0.3 4,256,826 + Xcc-8004.4440.1 0.37 -2.3 4,256,826 + Xcc-8004.4440.1 0.37 +2.7 4,256,826 + Xcc-8004.4440.1 0.37 -0.2 4,256,826 + Xcc-8004.4440.1 0.37 -1.5 4,256,826 + Xcc-8004.4440.1 0.37 -0.3 4,256,826 + Xcc-8004.4440.1 0.37 -2.4 4,256,827 - Xcc-8004.4440.1 0.38 -3.2 4,256,827 - Xcc-8004.4440.1 0.38 -1.2 4,256,827 - Xcc-8004.4440.1 0.38 -2.4 4,256,827 - Xcc-8004.4440.1 0.38 +0.6 4,256,827 - Xcc-8004.4440.1 0.38 -1.2 4,256,827 - Xcc-8004.4440.1 0.38 +1.1 4,256,827 - Xcc-8004.4440.1 0.38 -0.8 4,256,886 + Xcc-8004.4440.1 0.45 +0.9 4,256,922 + Xcc-8004.4440.1 0.50 +2.1 4,256,922 + Xcc-8004.4440.1 0.50 +1.2 4,256,922 + Xcc-8004.4440.1 0.50 +0.6 4,256,922 + Xcc-8004.4440.1 0.50 +1.1 4,256,922 + Xcc-8004.4440.1 0.50 -1.6 4,256,923 - Xcc-8004.4440.1 0.50 -0.1 4,256,923 - Xcc-8004.4440.1 0.50 -2.0 4,256,923 - Xcc-8004.4440.1 0.50 -1.6 4,256,991 + Xcc-8004.4440.1 0.58 -2.2 4,256,992 - Xcc-8004.4440.1 0.58 -2.4 4,257,081 + Xcc-8004.4440.1 0.70 +0.5 4,257,081 + Xcc-8004.4440.1 0.70 +0.5 4,257,081 + Xcc-8004.4440.1 0.70 +0.9 4,257,081 + Xcc-8004.4440.1 0.70 +0.7 4,257,081 + Xcc-8004.4440.1 0.70 +0.7 4,257,081 + Xcc-8004.4440.1 0.70 +0.1 4,257,081 + Xcc-8004.4440.1 0.70 -1.8 4,257,081 + Xcc-8004.4440.1 0.70 -3.2 4,257,081 + Xcc-8004.4440.1 0.70 -1.6 4,257,081 + Xcc-8004.4440.1 0.70 +0.0 4,257,082 - Xcc-8004.4440.1 0.70 -0.5 4,257,082 - Xcc-8004.4440.1 0.70 +0.2 4,257,082 - Xcc-8004.4440.1 0.70 -2.2 4,257,082 - Xcc-8004.4440.1 0.70 -1.9 4,257,082 - Xcc-8004.4440.1 0.70 -0.4 4,257,082 - Xcc-8004.4440.1 0.70 -1.5 4,257,082 - Xcc-8004.4440.1 0.70 -1.8 4,257,082 - Xcc-8004.4440.1 0.70 +4.3 4,257,082 - Xcc-8004.4440.1 0.70 +0.4 4,257,082 - Xcc-8004.4440.1 0.70 +1.4 4,257,141 + Xcc-8004.4440.1 0.77 +1.7 4,257,141 + Xcc-8004.4440.1 0.77 +1.3 4,257,141 + Xcc-8004.4440.1 0.77 +0.1 4,257,142 - Xcc-8004.4440.1 0.77 +0.4 4,257,142 - Xcc-8004.4440.1 0.77 -1.2 4,257,142 - Xcc-8004.4440.1 0.77 -0.9 4,257,142 - Xcc-8004.4440.1 0.77 -0.5 4,257,142 - Xcc-8004.4440.1 0.77 +0.9 4,257,142 - Xcc-8004.4440.1 0.77 +1.4 4,257,277 + +0.6 4,257,318 + -1.2 4,257,318 + -0.8 4,257,318 + +0.1 4,257,318 + +0.2 4,257,318 + +1.9 4,257,318 + +2.1 4,257,318 + +1.5 4,257,318 + +0.3 4,257,318 + +0.6 4,257,319 - -0.9 4,257,319 - +1.3 4,257,319 - -1.7 4,257,319 - -1.4 4,257,319 - +1.1 4,257,319 - +0.6 4,257,319 - -1.5 4,257,487 + +0.6 4,257,487 + -0.7 4,257,487 + -0.4 4,257,487 + +1.2 4,257,487 + -0.8 4,257,487 + +1.0 4,257,487 + -2.2 4,257,487 + -0.8 4,257,488 - +1.1 4,257,488 - -0.4 4,257,488 - +2.4 4,257,488 - -0.4 4,257,488 - -3.1 4,257,488 - +1.0 4,257,522 + -3.0 4,257,522 + +0.1 4,257,522 + +0.4 4,257,523 - +1.3 4,257,523 - -0.2 4,257,523 - -0.9 4,257,635 + -0.9 4,257,635 + -2.2 4,257,636 - -0.1 4,257,636 - +0.5 4,257,782 + Xcc-8004.4441.1 0.21 -0.5 4,257,782 + Xcc-8004.4441.1 0.21 -0.5 4,257,783 - Xcc-8004.4441.1 0.22 +1.3 4,257,914 + Xcc-8004.4441.1 0.35 +1.1 4,257,914 + Xcc-8004.4441.1 0.35 -0.9 4,258,061 + Xcc-8004.4441.1 0.50 -1.6 4,258,061 + Xcc-8004.4441.1 0.50 +1.0 4,258,061 + Xcc-8004.4441.1 0.50 +0.5 4,258,062 - Xcc-8004.4441.1 0.50 -1.1 4,258,062 - Xcc-8004.4441.1 0.50 -1.6 4,258,241 + Xcc-8004.4441.1 0.69 +0.3 4,258,242 - Xcc-8004.4441.1 0.69 -1.7 4,258,242 - Xcc-8004.4441.1 0.69 -2.1 4,258,289 + Xcc-8004.4441.1 0.74 +0.5
Or see this region's nucleotide sequence