Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3979.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3976.1 and Xcc-8004.3977.1 are separated by 93 nucleotidesXcc-8004.3977.1 and Xcc-8004.3978.1 overlap by 4 nucleotidesXcc-8004.3978.1 and Xcc-8004.3979.1 are separated by 2 nucleotidesXcc-8004.3979.1 and Xcc-8004.3980.1 are separated by 198 nucleotides Xcc-8004.3976.1: Xcc-8004.3976.1 - 2-methylaconitate cis-trans isomerase, at 3,854,726 to 3,855,925 Xcc-8004.3976.1 Xcc-8004.3977.1: Xcc-8004.3977.1 - FIG01214671: hypothetical protein, at 3,856,019 to 3,856,336 Xcc-8004.3977.1 Xcc-8004.3978.1: Xcc-8004.3978.1 - FIG01211989: hypothetical protein, at 3,856,333 to 3,856,659 Xcc-8004.3978.1 Xcc-8004.3979.1: Xcc-8004.3979.1 - 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79), at 3,856,662 to 3,859,256 Xcc-8004.3979.1 Xcc-8004.3980.1: Xcc-8004.3980.1 - 2-methylcitrate synthase (EC 2.3.3.5), at 3,859,455 to 3,860,609 Xcc-8004.3980.1 Position (kb) 3856 3857 3858 3859 3860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3855.669 kb on + strand, within Xcc-8004.3976.1at 3855.669 kb on + strand, within Xcc-8004.3976.1at 3855.670 kb on - strand, within Xcc-8004.3976.1at 3855.765 kb on + strand, within Xcc-8004.3976.1at 3855.888 kb on + strandat 3855.889 kb on - strandat 3855.889 kb on - strandat 3856.049 kb on - strandat 3856.104 kb on + strand, within Xcc-8004.3977.1at 3856.105 kb on - strand, within Xcc-8004.3977.1at 3856.116 kb on + strand, within Xcc-8004.3977.1at 3856.180 kb on + strand, within Xcc-8004.3977.1at 3856.181 kb on - strand, within Xcc-8004.3977.1at 3856.181 kb on - strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.237 kb on + strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.238 kb on - strand, within Xcc-8004.3977.1at 3856.276 kb on - strand, within Xcc-8004.3977.1at 3856.484 kb on + strand, within Xcc-8004.3978.1at 3856.485 kb on - strand, within Xcc-8004.3978.1at 3856.485 kb on - strand, within Xcc-8004.3978.1at 3856.502 kb on + strand, within Xcc-8004.3978.1at 3856.502 kb on + strand, within Xcc-8004.3978.1at 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.649 kb on + strandat 3856.650 kb on - strandat 3856.660 kb on - strandat 3856.726 kb on + strandat 3856.726 kb on + strandat 3856.726 kb on + strandat 3857.077 kb on + strand, within Xcc-8004.3979.1at 3857.078 kb on - strand, within Xcc-8004.3979.1at 3857.078 kb on - strand, within Xcc-8004.3979.1at 3857.078 kb on - strand, within Xcc-8004.3979.1at 3857.078 kb on - strand, within Xcc-8004.3979.1at 3857.243 kb on - strand, within Xcc-8004.3979.1at 3857.284 kb on + strand, within Xcc-8004.3979.1at 3857.285 kb on - strand, within Xcc-8004.3979.1at 3857.285 kb on - strand, within Xcc-8004.3979.1at 3857.434 kb on + strand, within Xcc-8004.3979.1at 3857.435 kb on - strand, within Xcc-8004.3979.1at 3857.435 kb on - strand, within Xcc-8004.3979.1at 3857.435 kb on - strand, within Xcc-8004.3979.1at 3857.438 kb on + strand, within Xcc-8004.3979.1at 3857.459 kb on - strand, within Xcc-8004.3979.1at 3857.459 kb on - strand, within Xcc-8004.3979.1at 3857.512 kb on + strand, within Xcc-8004.3979.1at 3857.513 kb on - strand, within Xcc-8004.3979.1at 3857.513 kb on - strand, within Xcc-8004.3979.1at 3857.671 kb on + strand, within Xcc-8004.3979.1at 3857.770 kb on + strand, within Xcc-8004.3979.1at 3857.771 kb on - strand, within Xcc-8004.3979.1at 3857.771 kb on - strand, within Xcc-8004.3979.1at 3857.771 kb on - strand, within Xcc-8004.3979.1at 3857.908 kb on + strand, within Xcc-8004.3979.1at 3857.966 kb on + strand, within Xcc-8004.3979.1at 3857.967 kb on - strand, within Xcc-8004.3979.1at 3857.967 kb on - strand, within Xcc-8004.3979.1at 3858.048 kb on - strand, within Xcc-8004.3979.1at 3858.048 kb on - strand, within Xcc-8004.3979.1at 3858.217 kb on + strand, within Xcc-8004.3979.1at 3858.217 kb on + strand, within Xcc-8004.3979.1at 3858.218 kb on - strand, within Xcc-8004.3979.1at 3858.265 kb on + strand, within Xcc-8004.3979.1at 3858.265 kb on + strand, within Xcc-8004.3979.1at 3858.265 kb on + strand, within Xcc-8004.3979.1at 3858.266 kb on - strand, within Xcc-8004.3979.1at 3858.316 kb on + strand, within Xcc-8004.3979.1at 3858.316 kb on + strand, within Xcc-8004.3979.1at 3858.341 kb on - strand, within Xcc-8004.3979.1at 3858.430 kb on + strand, within Xcc-8004.3979.1at 3858.430 kb on + strand, within Xcc-8004.3979.1at 3858.430 kb on + strand, within Xcc-8004.3979.1at 3858.430 kb on + strand, within Xcc-8004.3979.1at 3858.431 kb on - strand, within Xcc-8004.3979.1at 3858.431 kb on - strand, within Xcc-8004.3979.1at 3858.703 kb on + strand, within Xcc-8004.3979.1at 3858.704 kb on - strand, within Xcc-8004.3979.1at 3858.704 kb on - strand, within Xcc-8004.3979.1at 3858.880 kb on + strand, within Xcc-8004.3979.1at 3859.087 kb on + strandat 3859.087 kb on + strandat 3859.150 kb on + strandat 3859.150 kb on + strandat 3859.151 kb on - strandat 3859.151 kb on - strandat 3859.165 kb on + strandat 3859.165 kb on + strandat 3859.166 kb on - strandat 3859.380 kb on - strandat 3859.504 kb on + strandat 3859.598 kb on + strand, within Xcc-8004.3980.1at 3859.599 kb on - strand, within Xcc-8004.3980.1at 3859.630 kb on + strand, within Xcc-8004.3980.1at 3859.630 kb on + strand, within Xcc-8004.3980.1at 3859.631 kb on - strand, within Xcc-8004.3980.1at 3859.714 kb on + strand, within Xcc-8004.3980.1at 3859.714 kb on + strand, within Xcc-8004.3980.1at 3859.714 kb on + strand, within Xcc-8004.3980.1at 3859.715 kb on - strand, within Xcc-8004.3980.1at 3859.715 kb on - strand, within Xcc-8004.3980.1at 3859.715 kb on - strand, within Xcc-8004.3980.1at 3859.795 kb on + strand, within Xcc-8004.3980.1at 3859.880 kb on - strand, within Xcc-8004.3980.1at 3859.966 kb on + strand, within Xcc-8004.3980.1at 3859.966 kb on + strand, within Xcc-8004.3980.1at 3859.966 kb on + strand, within Xcc-8004.3980.1at 3859.967 kb on - strand, within Xcc-8004.3980.1at 3859.967 kb on - strand, within Xcc-8004.3980.1at 3859.967 kb on - strand, within Xcc-8004.3980.1at 3860.167 kb on + strand, within Xcc-8004.3980.1at 3860.167 kb on + strand, within Xcc-8004.3980.1at 3860.173 kb on + strand, within Xcc-8004.3980.1at 3860.174 kb on - strand, within Xcc-8004.3980.1at 3860.179 kb on + strand, within Xcc-8004.3980.1at 3860.180 kb on - strand, within Xcc-8004.3980.1at 3860.180 kb on - strand, within Xcc-8004.3980.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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3,855,669 + Xcc-8004.3976.1 0.79 -0.7
3,855,669 + Xcc-8004.3976.1 0.79 -2.8
3,855,670 - Xcc-8004.3976.1 0.79 -1.3
3,855,765 + Xcc-8004.3976.1 0.87 +0.2
3,855,888 + -1.1
3,855,889 - -1.2
3,855,889 - -0.7
3,856,049 - -1.6
3,856,104 + Xcc-8004.3977.1 0.27 +0.2
3,856,105 - Xcc-8004.3977.1 0.27 +0.2
3,856,116 + Xcc-8004.3977.1 0.31 -1.0
3,856,180 + Xcc-8004.3977.1 0.51 +0.1
3,856,181 - Xcc-8004.3977.1 0.51 +0.3
3,856,181 - Xcc-8004.3977.1 0.51 -2.3
3,856,237 + Xcc-8004.3977.1 0.69 +0.4
3,856,237 + Xcc-8004.3977.1 0.69 -1.2
3,856,237 + Xcc-8004.3977.1 0.69 -2.7
3,856,238 - Xcc-8004.3977.1 0.69 -0.5
3,856,238 - Xcc-8004.3977.1 0.69 +0.4
3,856,238 - Xcc-8004.3977.1 0.69 -1.3
3,856,238 - Xcc-8004.3977.1 0.69 +1.1
3,856,276 - Xcc-8004.3977.1 0.81 -2.1
3,856,484 + Xcc-8004.3978.1 0.46 -1.1
3,856,485 - Xcc-8004.3978.1 0.46 +1.7
3,856,485 - Xcc-8004.3978.1 0.46 -1.0
3,856,502 + Xcc-8004.3978.1 0.52 -0.4
3,856,502 + Xcc-8004.3978.1 0.52 -1.7
3,856,649 + +0.0
3,856,649 + -0.9
3,856,649 + -1.9
3,856,649 + +2.3
3,856,650 - -1.1
3,856,660 - -0.6
3,856,726 + -1.6
3,856,726 + -1.2
3,856,726 + -0.5
3,857,077 + Xcc-8004.3979.1 0.16 -0.7
3,857,078 - Xcc-8004.3979.1 0.16 +0.7
3,857,078 - Xcc-8004.3979.1 0.16 -1.3
3,857,078 - Xcc-8004.3979.1 0.16 -0.9
3,857,078 - Xcc-8004.3979.1 0.16 +0.6
3,857,243 - Xcc-8004.3979.1 0.22 -0.1
3,857,284 + Xcc-8004.3979.1 0.24 -0.5
3,857,285 - Xcc-8004.3979.1 0.24 -0.0
3,857,285 - Xcc-8004.3979.1 0.24 -1.3
3,857,434 + Xcc-8004.3979.1 0.30 -2.8
3,857,435 - Xcc-8004.3979.1 0.30 -0.5
3,857,435 - Xcc-8004.3979.1 0.30 -2.1
3,857,435 - Xcc-8004.3979.1 0.30 -1.3
3,857,438 + Xcc-8004.3979.1 0.30 -2.1
3,857,459 - Xcc-8004.3979.1 0.31 -1.6
3,857,459 - Xcc-8004.3979.1 0.31 -2.2
3,857,512 + Xcc-8004.3979.1 0.33 +2.5
3,857,513 - Xcc-8004.3979.1 0.33 +0.1
3,857,513 - Xcc-8004.3979.1 0.33 +0.5
3,857,671 + Xcc-8004.3979.1 0.39 +0.9
3,857,770 + Xcc-8004.3979.1 0.43 -1.6
3,857,771 - Xcc-8004.3979.1 0.43 -2.3
3,857,771 - Xcc-8004.3979.1 0.43 -0.7
3,857,771 - Xcc-8004.3979.1 0.43 -1.7
3,857,908 + Xcc-8004.3979.1 0.48 -0.5
3,857,966 + Xcc-8004.3979.1 0.50 -0.2
3,857,967 - Xcc-8004.3979.1 0.50 -0.2
3,857,967 - Xcc-8004.3979.1 0.50 -2.7
3,858,048 - Xcc-8004.3979.1 0.53 -2.5
3,858,048 - Xcc-8004.3979.1 0.53 -1.3
3,858,217 + Xcc-8004.3979.1 0.60 -0.5
3,858,217 + Xcc-8004.3979.1 0.60 -0.9
3,858,218 - Xcc-8004.3979.1 0.60 -1.7
3,858,265 + Xcc-8004.3979.1 0.62 -1.1
3,858,265 + Xcc-8004.3979.1 0.62 -2.5
3,858,265 + Xcc-8004.3979.1 0.62 -0.2
3,858,266 - Xcc-8004.3979.1 0.62 -2.1
3,858,316 + Xcc-8004.3979.1 0.64 -0.7
3,858,316 + Xcc-8004.3979.1 0.64 -0.5
3,858,341 - Xcc-8004.3979.1 0.65 -0.8
3,858,430 + Xcc-8004.3979.1 0.68 -1.6
3,858,430 + Xcc-8004.3979.1 0.68 -1.3
3,858,430 + Xcc-8004.3979.1 0.68 -0.7
3,858,430 + Xcc-8004.3979.1 0.68 +2.4
3,858,431 - Xcc-8004.3979.1 0.68 +1.1
3,858,431 - Xcc-8004.3979.1 0.68 -0.7
3,858,703 + Xcc-8004.3979.1 0.79 +1.5
3,858,704 - Xcc-8004.3979.1 0.79 -1.2
3,858,704 - Xcc-8004.3979.1 0.79 -0.1
3,858,880 + Xcc-8004.3979.1 0.85 -2.9
3,859,087 + -3.2
3,859,087 + -2.5
3,859,150 + -1.1
3,859,150 + -3.0
3,859,151 - -0.5
3,859,151 - -2.3
3,859,165 + -0.5
3,859,165 + -0.5
3,859,166 - -2.0
3,859,380 - +0.8
3,859,504 + -1.3
3,859,598 + Xcc-8004.3980.1 0.12 +0.3
3,859,599 - Xcc-8004.3980.1 0.12 -2.4
3,859,630 + Xcc-8004.3980.1 0.15 +0.1
3,859,630 + Xcc-8004.3980.1 0.15 -1.6
3,859,631 - Xcc-8004.3980.1 0.15 -1.2
3,859,714 + Xcc-8004.3980.1 0.22 +0.5
3,859,714 + Xcc-8004.3980.1 0.22 -1.7
3,859,714 + Xcc-8004.3980.1 0.22 -1.2
3,859,715 - Xcc-8004.3980.1 0.23 +4.3
3,859,715 - Xcc-8004.3980.1 0.23 +0.8
3,859,715 - Xcc-8004.3980.1 0.23 -0.2
3,859,795 + Xcc-8004.3980.1 0.29 -0.8
3,859,880 - Xcc-8004.3980.1 0.37 -0.5
3,859,966 + Xcc-8004.3980.1 0.44 +1.0
3,859,966 + Xcc-8004.3980.1 0.44 +0.4
3,859,966 + Xcc-8004.3980.1 0.44 -1.8
3,859,967 - Xcc-8004.3980.1 0.44 +1.7
3,859,967 - Xcc-8004.3980.1 0.44 +0.5
3,859,967 - Xcc-8004.3980.1 0.44 -1.8
3,860,167 + Xcc-8004.3980.1 0.62 +0.3
3,860,167 + Xcc-8004.3980.1 0.62 +0.3
3,860,173 + Xcc-8004.3980.1 0.62 -2.1
3,860,174 - Xcc-8004.3980.1 0.62 -0.9
3,860,179 + Xcc-8004.3980.1 0.63 +0.1
3,860,180 - Xcc-8004.3980.1 0.63 -0.7
3,860,180 - Xcc-8004.3980.1 0.63 +1.5

Or see this region's nucleotide sequence