Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3733.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3731.1 and Xcc-8004.3732.1 overlap by 1 nucleotidesXcc-8004.3732.1 and Xcc-8004.3733.1 are separated by 39 nucleotidesXcc-8004.3733.1 and Xcc-8004.3734.1 overlap by 14 nucleotidesXcc-8004.3734.1 and Xcc-8004.3735.1 are separated by 4 nucleotidesXcc-8004.3735.1 and Xcc-8004.3736.1 overlap by 4 nucleotides Xcc-8004.3731.1: Xcc-8004.3731.1 - Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV), at 3,606,648 to 3,608,570 Xcc-8004.3731.1 Xcc-8004.3732.1: Xcc-8004.3732.1 - HpaP protein; Type III secretion protein (YscP), at 3,608,570 to 3,609,205 Xcc-8004.3732.1 Xcc-8004.3733.1: Xcc-8004.3733.1 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 3,609,245 to 3,610,252 Xcc-8004.3733.1 Xcc-8004.3734.1: Xcc-8004.3734.1 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 3,610,239 to 3,610,883 Xcc-8004.3734.1 Xcc-8004.3735.1: Xcc-8004.3735.1 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 3,610,888 to 3,611,148 Xcc-8004.3735.1 Xcc-8004.3736.1: Xcc-8004.3736.1 - HpaA protein, at 3,611,145 to 3,611,960 Xcc-8004.3736.1 Position (kb) 3609 3610 3611Strain fitness (log2 ratio) -3 -2 -1 0 1at 3608.464 kb on - strandat 3608.508 kb on + strandat 3609.148 kb on + strandat 3609.710 kb on - strand, within Xcc-8004.3733.1at 3609.980 kb on - strand, within Xcc-8004.3733.1at 3609.980 kb on - strand, within Xcc-8004.3733.1at 3610.039 kb on - strand, within Xcc-8004.3733.1at 3610.155 kb on - strandat 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.312 kb on + strand, within Xcc-8004.3734.1at 3610.510 kb on + strand, within Xcc-8004.3734.1at 3610.511 kb on - strand, within Xcc-8004.3734.1at 3610.511 kb on - strand, within Xcc-8004.3734.1at 3610.716 kb on + strand, within Xcc-8004.3734.1at 3610.717 kb on - strand, within Xcc-8004.3734.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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3,608,464 - -0.7
3,608,508 + -0.3
3,609,148 + -0.4
3,609,710 - Xcc-8004.3733.1 0.46 -1.5
3,609,980 - Xcc-8004.3733.1 0.73 -3.4
3,609,980 - Xcc-8004.3733.1 0.73 -2.6
3,610,039 - Xcc-8004.3733.1 0.79 -0.5
3,610,155 - -0.8
3,610,312 + Xcc-8004.3734.1 0.11 +0.7
3,610,312 + Xcc-8004.3734.1 0.11 -1.8
3,610,312 + Xcc-8004.3734.1 0.11 +0.3
3,610,510 + Xcc-8004.3734.1 0.42 -0.3
3,610,511 - Xcc-8004.3734.1 0.42 -1.8
3,610,511 - Xcc-8004.3734.1 0.42 -0.4
3,610,716 + Xcc-8004.3734.1 0.74 -0.5
3,610,717 - Xcc-8004.3734.1 0.74 +0.5

Or see this region's nucleotide sequence