Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3715.1 and Xcc-8004.3714.1 overlap by 65 nucleotides Xcc-8004.3714.1 and Xcc-8004.3716.1 overlap by 95 nucleotides Xcc-8004.3716.1 and Xcc-8004.3717.1 are separated by 77 nucleotides Xcc-8004.3717.1 and Xcc-8004.3718.1 are separated by 341 nucleotides Xcc-8004.3718.1 and Xcc-8004.3720.1 are separated by 78 nucleotides
Xcc-8004.3715.1: Xcc-8004.3715.1 - FIG01212258: hypothetical protein, at 3,595,579 to 3,596,112
Xcc-8004.3715.1
Xcc-8004.3714.1: Xcc-8004.3714.1 - hypothetical protein, at 3,596,048 to 3,596,203
Xcc-8004.3714.1
Xcc-8004.3716.1: Xcc-8004.3716.1 - putative; ORF located using Glimmer/Genemark, at 3,596,109 to 3,596,270
Xcc-8004.3716.1
Xcc-8004.3717.1: Xcc-8004.3717.1 - Hpa2 protein, at 3,596,348 to 3,596,920
Xcc-8004.3717.1
Xcc-8004.3718.1: Xcc-8004.3718.1 - Hpa1 protein, at 3,597,262 to 3,597,663
Xcc-8004.3718.1
Xcc-8004.3720.1: Xcc-8004.3720.1 - Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG), at 3,597,742 to 3,599,559
Xcc-8004.3720.1
Position (kb) 3596
3597 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3595.525 kb on + strand at 3595.526 kb on - strand at 3595.526 kb on - strand at 3595.657 kb on + strand, within Xcc-8004.3715.1 at 3595.765 kb on + strand, within Xcc-8004.3715.1 at 3595.951 kb on - strand, within Xcc-8004.3715.1 at 3596.097 kb on - strand at 3596.193 kb on + strand at 3596.193 kb on + strand at 3596.433 kb on + strand, within Xcc-8004.3717.1 at 3596.434 kb on - strand, within Xcc-8004.3717.1 at 3596.456 kb on - strand, within Xcc-8004.3717.1 at 3596.502 kb on + strand, within Xcc-8004.3717.1 at 3596.502 kb on + strand, within Xcc-8004.3717.1 at 3596.670 kb on - strand, within Xcc-8004.3717.1 at 3597.061 kb on + strand at 3597.192 kb on - strand at 3597.192 kb on - strand at 3597.711 kb on + strand at 3597.711 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 3,595,525 + -1.3 3,595,526 - +1.1 3,595,526 - +1.5 3,595,657 + Xcc-8004.3715.1 0.15 -0.5 3,595,765 + Xcc-8004.3715.1 0.35 +1.0 3,595,951 - Xcc-8004.3715.1 0.70 +1.4 3,596,097 - -2.9 3,596,193 + -2.4 3,596,193 + -2.0 3,596,433 + Xcc-8004.3717.1 0.15 -2.2 3,596,434 - Xcc-8004.3717.1 0.15 -1.3 3,596,456 - Xcc-8004.3717.1 0.19 -0.9 3,596,502 + Xcc-8004.3717.1 0.27 -2.9 3,596,502 + Xcc-8004.3717.1 0.27 +0.2 3,596,670 - Xcc-8004.3717.1 0.56 +0.1 3,597,061 + -2.9 3,597,192 - +0.6 3,597,192 - -0.7 3,597,711 + -0.4 3,597,711 + -0.3
Or see this region's nucleotide sequence