Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3609.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3607.1 and Xcc-8004.3608.1 overlap by 4 nucleotidesXcc-8004.3608.1 and Xcc-8004.3609.1 overlap by 4 nucleotidesXcc-8004.3609.1 and Xcc-8004.3610.1 are separated by 17 nucleotides Xcc-8004.3607.1: Xcc-8004.3607.1 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 3,495,419 to 3,496,714 Xcc-8004.3607.1 Xcc-8004.3608.1: Xcc-8004.3608.1 - FIG024285: Hypothetical protein, at 3,496,711 to 3,497,256 Xcc-8004.3608.1 Xcc-8004.3609.1: Xcc-8004.3609.1 - FIG005069: Hypothetical protein, at 3,497,253 to 3,498,035 Xcc-8004.3609.1 Xcc-8004.3610.1: Xcc-8004.3610.1 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 3,498,053 to 3,499,123 Xcc-8004.3610.1 Position (kb) 3497 3498 3499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3496.260 kb on - strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.493 kb on + strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.494 kb on - strand, within Xcc-8004.3607.1at 3496.562 kb on + strand, within Xcc-8004.3607.1at 3496.605 kb on - strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.729 kb on + strandat 3496.730 kb on - strandat 3496.730 kb on - strandat 3496.730 kb on - strandat 3496.826 kb on - strand, within Xcc-8004.3608.1at 3496.826 kb on - strand, within Xcc-8004.3608.1at 3496.936 kb on + strand, within Xcc-8004.3608.1at 3497.200 kb on + strand, within Xcc-8004.3608.1at 3497.200 kb on + strand, within Xcc-8004.3608.1at 3497.201 kb on - strand, within Xcc-8004.3608.1at 3497.360 kb on - strand, within Xcc-8004.3609.1at 3497.392 kb on - strand, within Xcc-8004.3609.1at 3497.392 kb on - strand, within Xcc-8004.3609.1at 3497.808 kb on + strand, within Xcc-8004.3609.1at 3497.808 kb on + strand, within Xcc-8004.3609.1at 3497.808 kb on + strand, within Xcc-8004.3609.1at 3497.809 kb on - strand, within Xcc-8004.3609.1at 3497.809 kb on - strand, within Xcc-8004.3609.1at 3497.838 kb on + strand, within Xcc-8004.3609.1at 3497.839 kb on - strand, within Xcc-8004.3609.1at 3497.920 kb on - strand, within Xcc-8004.3609.1at 3497.920 kb on - strand, within Xcc-8004.3609.1at 3497.940 kb on + strand, within Xcc-8004.3609.1at 3497.942 kb on + strand, within Xcc-8004.3609.1at 3497.942 kb on + strand, within Xcc-8004.3609.1at 3497.943 kb on - strand, within Xcc-8004.3609.1at 3497.980 kb on - strandat 3497.988 kb on + strandat 3497.988 kb on + strandat 3498.165 kb on + strand, within Xcc-8004.3610.1at 3498.165 kb on + strand, within Xcc-8004.3610.1at 3498.165 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.324 kb on + strand, within Xcc-8004.3610.1at 3498.325 kb on - strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.347 kb on + strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.348 kb on - strand, within Xcc-8004.3610.1at 3498.359 kb on + strand, within Xcc-8004.3610.1at 3498.416 kb on + strand, within Xcc-8004.3610.1at 3498.416 kb on + strand, within Xcc-8004.3610.1at 3498.417 kb on - strand, within Xcc-8004.3610.1at 3498.417 kb on - strand, within Xcc-8004.3610.1at 3498.693 kb on - strand, within Xcc-8004.3610.1at 3498.693 kb on - strand, within Xcc-8004.3610.1at 3498.754 kb on + strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.755 kb on - strand, within Xcc-8004.3610.1at 3498.857 kb on - strand, within Xcc-8004.3610.1at 3498.920 kb on + strand, within Xcc-8004.3610.1at 3498.921 kb on - strand, within Xcc-8004.3610.1at 3498.999 kb on - strand, within Xcc-8004.3610.1at 3498.999 kb on - strand, within Xcc-8004.3610.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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3,496,260 - Xcc-8004.3607.1 0.65 +0.8
3,496,271 + Xcc-8004.3607.1 0.66 +1.8
3,496,271 + Xcc-8004.3607.1 0.66 +0.3
3,496,271 + Xcc-8004.3607.1 0.66 -1.2
3,496,271 + Xcc-8004.3607.1 0.66 -3.6
3,496,271 + Xcc-8004.3607.1 0.66 -1.1
3,496,272 - Xcc-8004.3607.1 0.66 -2.5
3,496,272 - Xcc-8004.3607.1 0.66 -0.1
3,496,493 + Xcc-8004.3607.1 0.83 +2.0
3,496,493 + Xcc-8004.3607.1 0.83 +0.7
3,496,493 + Xcc-8004.3607.1 0.83 -0.2
3,496,493 + Xcc-8004.3607.1 0.83 -2.6
3,496,494 - Xcc-8004.3607.1 0.83 +0.8
3,496,494 - Xcc-8004.3607.1 0.83 -0.3
3,496,494 - Xcc-8004.3607.1 0.83 +0.4
3,496,494 - Xcc-8004.3607.1 0.83 -2.5
3,496,494 - Xcc-8004.3607.1 0.83 +0.5
3,496,494 - Xcc-8004.3607.1 0.83 +1.1
3,496,562 + Xcc-8004.3607.1 0.88 +0.4
3,496,605 - +0.1
3,496,729 + +0.8
3,496,729 + +0.9
3,496,729 + -3.0
3,496,729 + +0.2
3,496,730 - -0.0
3,496,730 - +1.5
3,496,730 - -1.1
3,496,826 - Xcc-8004.3608.1 0.21 -2.8
3,496,826 - Xcc-8004.3608.1 0.21 -0.0
3,496,936 + Xcc-8004.3608.1 0.41 -1.0
3,497,200 + Xcc-8004.3608.1 0.90 -0.7
3,497,200 + Xcc-8004.3608.1 0.90 +0.6
3,497,201 - Xcc-8004.3608.1 0.90 -2.1
3,497,360 - Xcc-8004.3609.1 0.14 +0.7
3,497,392 - Xcc-8004.3609.1 0.18 -2.4
3,497,392 - Xcc-8004.3609.1 0.18 +0.4
3,497,808 + Xcc-8004.3609.1 0.71 -1.2
3,497,808 + Xcc-8004.3609.1 0.71 -2.1
3,497,808 + Xcc-8004.3609.1 0.71 -0.6
3,497,809 - Xcc-8004.3609.1 0.71 -0.4
3,497,809 - Xcc-8004.3609.1 0.71 -0.1
3,497,838 + Xcc-8004.3609.1 0.75 -0.0
3,497,839 - Xcc-8004.3609.1 0.75 -0.6
3,497,920 - Xcc-8004.3609.1 0.85 +1.2
3,497,920 - Xcc-8004.3609.1 0.85 -0.0
3,497,940 + Xcc-8004.3609.1 0.88 +0.3
3,497,942 + Xcc-8004.3609.1 0.88 -1.1
3,497,942 + Xcc-8004.3609.1 0.88 +0.1
3,497,943 - Xcc-8004.3609.1 0.88 +2.0
3,497,980 - +0.9
3,497,988 + -2.0
3,497,988 + +0.7
3,498,165 + Xcc-8004.3610.1 0.10 -3.1
3,498,165 + Xcc-8004.3610.1 0.10 +0.8
3,498,165 + Xcc-8004.3610.1 0.10 -0.5
3,498,324 + Xcc-8004.3610.1 0.25 +0.3
3,498,324 + Xcc-8004.3610.1 0.25 +1.9
3,498,324 + Xcc-8004.3610.1 0.25 -0.6
3,498,324 + Xcc-8004.3610.1 0.25 -0.7
3,498,325 - Xcc-8004.3610.1 0.25 -0.6
3,498,347 + Xcc-8004.3610.1 0.27 +0.5
3,498,347 + Xcc-8004.3610.1 0.27 -1.3
3,498,347 + Xcc-8004.3610.1 0.27 -0.3
3,498,348 - Xcc-8004.3610.1 0.28 +1.0
3,498,348 - Xcc-8004.3610.1 0.28 +1.4
3,498,348 - Xcc-8004.3610.1 0.28 -2.3
3,498,348 - Xcc-8004.3610.1 0.28 -2.7
3,498,359 + Xcc-8004.3610.1 0.29 +1.6
3,498,416 + Xcc-8004.3610.1 0.34 -2.1
3,498,416 + Xcc-8004.3610.1 0.34 +0.2
3,498,417 - Xcc-8004.3610.1 0.34 -2.2
3,498,417 - Xcc-8004.3610.1 0.34 +0.5
3,498,693 - Xcc-8004.3610.1 0.60 +0.2
3,498,693 - Xcc-8004.3610.1 0.60 +0.6
3,498,754 + Xcc-8004.3610.1 0.65 -0.2
3,498,755 - Xcc-8004.3610.1 0.66 -0.8
3,498,755 - Xcc-8004.3610.1 0.66 -0.8
3,498,755 - Xcc-8004.3610.1 0.66 +1.8
3,498,755 - Xcc-8004.3610.1 0.66 -0.3
3,498,857 - Xcc-8004.3610.1 0.75 +0.9
3,498,920 + Xcc-8004.3610.1 0.81 +1.0
3,498,921 - Xcc-8004.3610.1 0.81 -2.9
3,498,999 - Xcc-8004.3610.1 0.88 -0.5
3,498,999 - Xcc-8004.3610.1 0.88 +1.2

Or see this region's nucleotide sequence