Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3523.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3522.1 and Xcc-8004.3523.1 are separated by 222 nucleotidesXcc-8004.3523.1 and Xcc-8004.3524.1 are separated by 19 nucleotides Xcc-8004.3522.1: Xcc-8004.3522.1 - FIG01212902: hypothetical protein, at 3,409,336 to 3,409,833 Xcc-8004.3522.1 Xcc-8004.3523.1: Xcc-8004.3523.1 - Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit, at 3,410,056 to 3,410,958 Xcc-8004.3523.1 Xcc-8004.3524.1: Xcc-8004.3524.1 - Inner membrane component of tripartite multidrug resistance system, at 3,410,978 to 3,412,558 Xcc-8004.3524.1 Position (kb) 3410 3411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3409.296 kb on - strandat 3409.331 kb on + strandat 3409.332 kb on - strandat 3409.332 kb on - strandat 3409.332 kb on - strandat 3409.407 kb on - strand, within Xcc-8004.3522.1at 3409.407 kb on - strand, within Xcc-8004.3522.1at 3409.407 kb on - strand, within Xcc-8004.3522.1at 3409.407 kb on - strand, within Xcc-8004.3522.1at 3409.445 kb on + strand, within Xcc-8004.3522.1at 3409.446 kb on - strand, within Xcc-8004.3522.1at 3409.622 kb on + strand, within Xcc-8004.3522.1at 3409.623 kb on - strand, within Xcc-8004.3522.1at 3409.708 kb on + strand, within Xcc-8004.3522.1at 3409.853 kb on + strandat 3409.854 kb on - strandat 3409.904 kb on + strandat 3409.912 kb on + strandat 3410.115 kb on + strandat 3410.116 kb on - strandat 3410.116 kb on - strandat 3410.116 kb on - strandat 3410.116 kb on - strandat 3410.117 kb on + strandat 3410.117 kb on + strandat 3410.117 kb on + strandat 3410.117 kb on + strandat 3410.214 kb on + strand, within Xcc-8004.3523.1at 3410.214 kb on + strand, within Xcc-8004.3523.1at 3410.215 kb on - strand, within Xcc-8004.3523.1at 3410.434 kb on + strand, within Xcc-8004.3523.1at 3410.434 kb on + strand, within Xcc-8004.3523.1at 3410.524 kb on + strand, within Xcc-8004.3523.1at 3410.591 kb on - strand, within Xcc-8004.3523.1at 3410.793 kb on - strand, within Xcc-8004.3523.1at 3410.816 kb on - strand, within Xcc-8004.3523.1at 3410.899 kb on + strandat 3410.899 kb on + strandat 3410.900 kb on - strandat 3410.900 kb on - strandat 3410.967 kb on - strandat 3411.082 kb on - strandat 3411.082 kb on - strandat 3411.204 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.264 kb on + strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.265 kb on - strand, within Xcc-8004.3524.1at 3411.537 kb on + strand, within Xcc-8004.3524.1at 3411.538 kb on - strand, within Xcc-8004.3524.1at 3411.616 kb on - strand, within Xcc-8004.3524.1at 3411.616 kb on - strand, within Xcc-8004.3524.1at 3411.909 kb on + strand, within Xcc-8004.3524.1at 3411.909 kb on + strand, within Xcc-8004.3524.1at 3411.909 kb on + strand, within Xcc-8004.3524.1at 3411.909 kb on + strand, within Xcc-8004.3524.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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3,409,296 - -0.7
3,409,331 + -1.9
3,409,332 - +0.8
3,409,332 - +0.8
3,409,332 - +1.4
3,409,407 - Xcc-8004.3522.1 0.14 -2.1
3,409,407 - Xcc-8004.3522.1 0.14 +0.5
3,409,407 - Xcc-8004.3522.1 0.14 -1.0
3,409,407 - Xcc-8004.3522.1 0.14 -2.7
3,409,445 + Xcc-8004.3522.1 0.22 -0.3
3,409,446 - Xcc-8004.3522.1 0.22 +2.9
3,409,622 + Xcc-8004.3522.1 0.57 +0.8
3,409,623 - Xcc-8004.3522.1 0.58 +0.7
3,409,708 + Xcc-8004.3522.1 0.75 -0.6
3,409,853 + +0.4
3,409,854 - +0.3
3,409,904 + -2.0
3,409,912 + +1.5
3,410,115 + -0.5
3,410,116 - +1.3
3,410,116 - +0.4
3,410,116 - +0.6
3,410,116 - +0.6
3,410,117 + +0.9
3,410,117 + +0.7
3,410,117 + -0.2
3,410,117 + +0.2
3,410,214 + Xcc-8004.3523.1 0.17 -3.1
3,410,214 + Xcc-8004.3523.1 0.17 -2.0
3,410,215 - Xcc-8004.3523.1 0.18 -1.0
3,410,434 + Xcc-8004.3523.1 0.42 -1.3
3,410,434 + Xcc-8004.3523.1 0.42 +0.1
3,410,524 + Xcc-8004.3523.1 0.52 -2.8
3,410,591 - Xcc-8004.3523.1 0.59 -2.7
3,410,793 - Xcc-8004.3523.1 0.82 -0.3
3,410,816 - Xcc-8004.3523.1 0.84 -2.1
3,410,899 + +1.3
3,410,899 + +0.6
3,410,900 - +0.7
3,410,900 - +1.5
3,410,967 - -1.0
3,411,082 - -1.0
3,411,082 - -0.4
3,411,204 + Xcc-8004.3524.1 0.14 -1.8
3,411,264 + Xcc-8004.3524.1 0.18 -2.1
3,411,264 + Xcc-8004.3524.1 0.18 +0.6
3,411,264 + Xcc-8004.3524.1 0.18 -0.1
3,411,264 + Xcc-8004.3524.1 0.18 +0.9
3,411,264 + Xcc-8004.3524.1 0.18 -3.2
3,411,264 + Xcc-8004.3524.1 0.18 -0.8
3,411,265 - Xcc-8004.3524.1 0.18 +0.1
3,411,265 - Xcc-8004.3524.1 0.18 -2.6
3,411,265 - Xcc-8004.3524.1 0.18 +1.1
3,411,265 - Xcc-8004.3524.1 0.18 -1.9
3,411,265 - Xcc-8004.3524.1 0.18 -0.7
3,411,265 - Xcc-8004.3524.1 0.18 -1.9
3,411,265 - Xcc-8004.3524.1 0.18 -0.1
3,411,265 - Xcc-8004.3524.1 0.18 -0.4
3,411,537 + Xcc-8004.3524.1 0.35 -1.2
3,411,538 - Xcc-8004.3524.1 0.35 +1.5
3,411,616 - Xcc-8004.3524.1 0.40 +1.8
3,411,616 - Xcc-8004.3524.1 0.40 +1.2
3,411,909 + Xcc-8004.3524.1 0.59 -2.1
3,411,909 + Xcc-8004.3524.1 0.59 +2.0
3,411,909 + Xcc-8004.3524.1 0.59 -0.3
3,411,909 + Xcc-8004.3524.1 0.59 -0.7

Or see this region's nucleotide sequence