Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.319.1

Experiment: Xylemvessel barcodes T0L1P4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.318.1 and Xcc-8004.319.1 are separated by 303 nucleotidesXcc-8004.319.1 and Xcc-8004.321.1 are separated by 10 nucleotides Xcc-8004.318.1: Xcc-8004.318.1 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 307,996 to 310,038 Xcc-8004.318.1 Xcc-8004.319.1: Xcc-8004.319.1 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 310,342 to 311,952 Xcc-8004.319.1 Xcc-8004.321.1: Xcc-8004.321.1 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 311,963 to 313,126 Xcc-8004.321.1 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 309.380 kb on + strand, within Xcc-8004.318.1at 309.682 kb on + strand, within Xcc-8004.318.1at 309.682 kb on + strand, within Xcc-8004.318.1at 309.683 kb on - strand, within Xcc-8004.318.1at 309.683 kb on - strand, within Xcc-8004.318.1at 309.806 kb on + strand, within Xcc-8004.318.1at 309.806 kb on + strand, within Xcc-8004.318.1at 309.807 kb on - strand, within Xcc-8004.318.1at 309.835 kb on - strandat 309.891 kb on - strandat 309.983 kb on + strandat 309.984 kb on - strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.245 kb on + strandat 310.246 kb on - strandat 310.246 kb on - strandat 310.472 kb on + strandat 310.473 kb on - strandat 310.475 kb on + strandat 310.649 kb on - strand, within Xcc-8004.319.1at 310.649 kb on - strand, within Xcc-8004.319.1at 310.685 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.796 kb on + strand, within Xcc-8004.319.1at 310.797 kb on - strand, within Xcc-8004.319.1at 310.797 kb on - strand, within Xcc-8004.319.1at 310.800 kb on + strand, within Xcc-8004.319.1at 310.801 kb on - strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.864 kb on + strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 310.865 kb on - strand, within Xcc-8004.319.1at 311.022 kb on + strand, within Xcc-8004.319.1at 311.022 kb on + strand, within Xcc-8004.319.1at 311.023 kb on - strand, within Xcc-8004.319.1at 311.048 kb on + strand, within Xcc-8004.319.1at 311.048 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.081 kb on + strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.082 kb on - strand, within Xcc-8004.319.1at 311.194 kb on + strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.195 kb on - strand, within Xcc-8004.319.1at 311.372 kb on + strand, within Xcc-8004.319.1at 311.373 kb on - strand, within Xcc-8004.319.1at 311.373 kb on - strand, within Xcc-8004.319.1at 311.434 kb on + strand, within Xcc-8004.319.1at 311.434 kb on + strand, within Xcc-8004.319.1at 311.435 kb on - strand, within Xcc-8004.319.1at 311.450 kb on + strand, within Xcc-8004.319.1at 311.451 kb on - strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.531 kb on + strand, within Xcc-8004.319.1at 311.532 kb on - strand, within Xcc-8004.319.1at 311.532 kb on - strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.603 kb on + strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.604 kb on - strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.708 kb on + strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 311.709 kb on - strand, within Xcc-8004.319.1at 312.036 kb on + strandat 312.036 kb on + strandat 312.037 kb on - strandat 312.037 kb on - strandat 312.072 kb on + strandat 312.084 kb on + strand, within Xcc-8004.321.1at 312.084 kb on + strand, within Xcc-8004.321.1at 312.085 kb on - strand, within Xcc-8004.321.1at 312.147 kb on + strand, within Xcc-8004.321.1at 312.147 kb on + strand, within Xcc-8004.321.1at 312.148 kb on - strand, within Xcc-8004.321.1at 312.148 kb on - strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.213 kb on + strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.214 kb on - strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.219 kb on + strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.220 kb on - strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.246 kb on + strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.247 kb on - strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.321 kb on + strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.322 kb on - strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.606 kb on + strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.607 kb on - strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.665 kb on + strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.666 kb on - strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.783 kb on + strand, within Xcc-8004.321.1at 312.852 kb on + strand, within Xcc-8004.321.1at 312.915 kb on + strand, within Xcc-8004.321.1at 312.916 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1at 312.937 kb on - strand, within Xcc-8004.321.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
remove
309,380 + Xcc-8004.318.1 0.68 -2.2
309,682 + Xcc-8004.318.1 0.83 -2.7
309,682 + Xcc-8004.318.1 0.83 +0.2
309,683 - Xcc-8004.318.1 0.83 +0.2
309,683 - Xcc-8004.318.1 0.83 +0.2
309,806 + Xcc-8004.318.1 0.89 -2.4
309,806 + Xcc-8004.318.1 0.89 -1.1
309,807 - Xcc-8004.318.1 0.89 -1.7
309,835 - -1.3
309,891 - -1.8
309,983 + +0.2
309,984 - -2.2
310,245 + -0.7
310,245 + -2.1
310,245 + -1.5
310,245 + +0.0
310,246 - -1.0
310,246 - +0.9
310,472 + -1.4
310,473 - +0.0
310,475 + -2.3
310,649 - Xcc-8004.319.1 0.19 -2.8
310,649 - Xcc-8004.319.1 0.19 -1.9
310,685 + Xcc-8004.319.1 0.21 -2.4
310,796 + Xcc-8004.319.1 0.28 -0.1
310,796 + Xcc-8004.319.1 0.28 +1.2
310,796 + Xcc-8004.319.1 0.28 +1.0
310,797 - Xcc-8004.319.1 0.28 -3.3
310,797 - Xcc-8004.319.1 0.28 -1.1
310,800 + Xcc-8004.319.1 0.28 -1.7
310,801 - Xcc-8004.319.1 0.28 +2.0
310,864 + Xcc-8004.319.1 0.32 -2.0
310,864 + Xcc-8004.319.1 0.32 -0.7
310,864 + Xcc-8004.319.1 0.32 -1.3
310,864 + Xcc-8004.319.1 0.32 +1.0
310,864 + Xcc-8004.319.1 0.32 -2.8
310,864 + Xcc-8004.319.1 0.32 -2.4
310,865 - Xcc-8004.319.1 0.32 -0.8
310,865 - Xcc-8004.319.1 0.32 -1.3
310,865 - Xcc-8004.319.1 0.32 -1.4
311,022 + Xcc-8004.319.1 0.42 -2.2
311,022 + Xcc-8004.319.1 0.42 -1.0
311,023 - Xcc-8004.319.1 0.42 -1.1
311,048 + Xcc-8004.319.1 0.44 -1.8
311,048 + Xcc-8004.319.1 0.44 -0.2
311,081 + Xcc-8004.319.1 0.46 -3.1
311,081 + Xcc-8004.319.1 0.46 -1.9
311,081 + Xcc-8004.319.1 0.46 -1.0
311,081 + Xcc-8004.319.1 0.46 -3.0
311,082 - Xcc-8004.319.1 0.46 -1.1
311,082 - Xcc-8004.319.1 0.46 +0.0
311,082 - Xcc-8004.319.1 0.46 -0.8
311,082 - Xcc-8004.319.1 0.46 -2.5
311,082 - Xcc-8004.319.1 0.46 -3.2
311,194 + Xcc-8004.319.1 0.53 -0.8
311,195 - Xcc-8004.319.1 0.53 -0.8
311,195 - Xcc-8004.319.1 0.53 +0.0
311,195 - Xcc-8004.319.1 0.53 -1.8
311,372 + Xcc-8004.319.1 0.64 -1.4
311,373 - Xcc-8004.319.1 0.64 -1.3
311,373 - Xcc-8004.319.1 0.64 -2.8
311,434 + Xcc-8004.319.1 0.68 -2.5
311,434 + Xcc-8004.319.1 0.68 -1.3
311,435 - Xcc-8004.319.1 0.68 -2.3
311,450 + Xcc-8004.319.1 0.69 +0.5
311,451 - Xcc-8004.319.1 0.69 +2.0
311,531 + Xcc-8004.319.1 0.74 -0.9
311,531 + Xcc-8004.319.1 0.74 -0.3
311,531 + Xcc-8004.319.1 0.74 +0.0
311,532 - Xcc-8004.319.1 0.74 -0.2
311,532 - Xcc-8004.319.1 0.74 -1.8
311,603 + Xcc-8004.319.1 0.78 +0.1
311,603 + Xcc-8004.319.1 0.78 +0.9
311,603 + Xcc-8004.319.1 0.78 +1.5
311,603 + Xcc-8004.319.1 0.78 +1.0
311,603 + Xcc-8004.319.1 0.78 -0.3
311,603 + Xcc-8004.319.1 0.78 +1.4
311,603 + Xcc-8004.319.1 0.78 -0.4
311,603 + Xcc-8004.319.1 0.78 -0.2
311,604 - Xcc-8004.319.1 0.78 -2.9
311,604 - Xcc-8004.319.1 0.78 -2.4
311,604 - Xcc-8004.319.1 0.78 -0.3
311,604 - Xcc-8004.319.1 0.78 +1.0
311,604 - Xcc-8004.319.1 0.78 +0.9
311,604 - Xcc-8004.319.1 0.78 +0.0
311,708 + Xcc-8004.319.1 0.85 -2.2
311,708 + Xcc-8004.319.1 0.85 +0.5
311,708 + Xcc-8004.319.1 0.85 -2.5
311,709 - Xcc-8004.319.1 0.85 -1.9
311,709 - Xcc-8004.319.1 0.85 -1.1
311,709 - Xcc-8004.319.1 0.85 -0.1
312,036 + +0.2
312,036 + -0.3
312,037 - +0.9
312,037 - -1.1
312,072 + +0.5
312,084 + Xcc-8004.321.1 0.10 +4.5
312,084 + Xcc-8004.321.1 0.10 +0.5
312,085 - Xcc-8004.321.1 0.10 -2.3
312,147 + Xcc-8004.321.1 0.16 -1.8
312,147 + Xcc-8004.321.1 0.16 -1.4
312,148 - Xcc-8004.321.1 0.16 +1.6
312,148 - Xcc-8004.321.1 0.16 -0.2
312,213 + Xcc-8004.321.1 0.21 +0.2
312,213 + Xcc-8004.321.1 0.21 -1.5
312,213 + Xcc-8004.321.1 0.21 -1.0
312,213 + Xcc-8004.321.1 0.21 -1.8
312,213 + Xcc-8004.321.1 0.21 -2.5
312,214 - Xcc-8004.321.1 0.22 -2.8
312,214 - Xcc-8004.321.1 0.22 -2.0
312,214 - Xcc-8004.321.1 0.22 -1.4
312,219 + Xcc-8004.321.1 0.22 -1.3
312,219 + Xcc-8004.321.1 0.22 -1.1
312,219 + Xcc-8004.321.1 0.22 -1.7
312,219 + Xcc-8004.321.1 0.22 -1.1
312,219 + Xcc-8004.321.1 0.22 +0.3
312,219 + Xcc-8004.321.1 0.22 +0.6
312,220 - Xcc-8004.321.1 0.22 +1.5
312,220 - Xcc-8004.321.1 0.22 -2.0
312,220 - Xcc-8004.321.1 0.22 +1.2
312,246 + Xcc-8004.321.1 0.24 -0.3
312,246 + Xcc-8004.321.1 0.24 +0.5
312,246 + Xcc-8004.321.1 0.24 +0.2
312,246 + Xcc-8004.321.1 0.24 +2.7
312,246 + Xcc-8004.321.1 0.24 -0.1
312,246 + Xcc-8004.321.1 0.24 -0.0
312,246 + Xcc-8004.321.1 0.24 +0.6
312,246 + Xcc-8004.321.1 0.24 -2.3
312,246 + Xcc-8004.321.1 0.24 +0.9
312,246 + Xcc-8004.321.1 0.24 -1.5
312,246 + Xcc-8004.321.1 0.24 +1.7
312,246 + Xcc-8004.321.1 0.24 +1.6
312,246 + Xcc-8004.321.1 0.24 +0.2
312,246 + Xcc-8004.321.1 0.24 +0.8
312,246 + Xcc-8004.321.1 0.24 -1.7
312,246 + Xcc-8004.321.1 0.24 +1.3
312,246 + Xcc-8004.321.1 0.24 -0.6
312,246 + Xcc-8004.321.1 0.24 +0.0
312,247 - Xcc-8004.321.1 0.24 -1.9
312,247 - Xcc-8004.321.1 0.24 -1.0
312,247 - Xcc-8004.321.1 0.24 -0.6
312,247 - Xcc-8004.321.1 0.24 -1.1
312,247 - Xcc-8004.321.1 0.24 -1.7
312,247 - Xcc-8004.321.1 0.24 -1.0
312,247 - Xcc-8004.321.1 0.24 +0.7
312,247 - Xcc-8004.321.1 0.24 +0.1
312,247 - Xcc-8004.321.1 0.24 +2.2
312,247 - Xcc-8004.321.1 0.24 -1.1
312,321 + Xcc-8004.321.1 0.31 +0.2
312,321 + Xcc-8004.321.1 0.31 +1.0
312,321 + Xcc-8004.321.1 0.31 +0.0
312,322 - Xcc-8004.321.1 0.31 +0.3
312,322 - Xcc-8004.321.1 0.31 +0.0
312,322 - Xcc-8004.321.1 0.31 -1.5
312,322 - Xcc-8004.321.1 0.31 +0.6
312,322 - Xcc-8004.321.1 0.31 -0.8
312,322 - Xcc-8004.321.1 0.31 -1.1
312,322 - Xcc-8004.321.1 0.31 -2.1
312,606 + Xcc-8004.321.1 0.55 +0.3
312,606 + Xcc-8004.321.1 0.55 +0.3
312,607 - Xcc-8004.321.1 0.55 -0.6
312,607 - Xcc-8004.321.1 0.55 +0.1
312,607 - Xcc-8004.321.1 0.55 -0.1
312,607 - Xcc-8004.321.1 0.55 +0.4
312,665 + Xcc-8004.321.1 0.60 -1.3
312,665 + Xcc-8004.321.1 0.60 +1.1
312,666 - Xcc-8004.321.1 0.60 +1.0
312,666 - Xcc-8004.321.1 0.60 +1.9
312,666 - Xcc-8004.321.1 0.60 -0.4
312,666 - Xcc-8004.321.1 0.60 -3.0
312,666 - Xcc-8004.321.1 0.60 -3.0
312,783 + Xcc-8004.321.1 0.70 +0.5
312,783 + Xcc-8004.321.1 0.70 -0.8
312,852 + Xcc-8004.321.1 0.76 +1.5
312,915 + Xcc-8004.321.1 0.82 +0.5
312,916 - Xcc-8004.321.1 0.82 -1.1
312,937 - Xcc-8004.321.1 0.84 +0.0
312,937 - Xcc-8004.321.1 0.84 -1.5
312,937 - Xcc-8004.321.1 0.84 -2.1
312,937 - Xcc-8004.321.1 0.84 +4.0
312,937 - Xcc-8004.321.1 0.84 +1.0
312,937 - Xcc-8004.321.1 0.84 -0.5
312,937 - Xcc-8004.321.1 0.84 +0.9

Or see this region's nucleotide sequence