Experiment: Xylemvessel barcodes T0L1P4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3137.1 and Xcc-8004.3138.1 are separated by 95 nucleotides Xcc-8004.3138.1 and Xcc-8004.3139.1 are separated by 5 nucleotides Xcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotides
Xcc-8004.3137.1: Xcc-8004.3137.1 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 3,058,190 to 3,059,293
Xcc-8004.3137.1
Xcc-8004.3138.1: Xcc-8004.3138.1 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 3,059,389 to 3,059,880
Xcc-8004.3138.1
Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683
Xcc-8004.3139.1
Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045
Xcc-8004.3140.1
Position (kb)
3059
3060 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3058.466 kb on + strand, within Xcc-8004.3137.1 at 3058.466 kb on + strand, within Xcc-8004.3137.1 at 3058.467 kb on - strand, within Xcc-8004.3137.1 at 3058.467 kb on - strand, within Xcc-8004.3137.1 at 3058.467 kb on - strand, within Xcc-8004.3137.1 at 3058.467 kb on - strand, within Xcc-8004.3137.1 at 3059.071 kb on - strand, within Xcc-8004.3137.1 at 3059.124 kb on + strand, within Xcc-8004.3137.1 at 3059.124 kb on + strand, within Xcc-8004.3137.1 at 3059.125 kb on - strand, within Xcc-8004.3137.1 at 3059.125 kb on - strand, within Xcc-8004.3137.1 at 3059.390 kb on + strand at 3059.390 kb on + strand at 3059.390 kb on + strand at 3059.391 kb on - strand at 3059.391 kb on - strand at 3059.391 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.888 kb on - strand at 3059.955 kb on - strand at 3060.693 kb on - strand at 3060.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4 remove 3,058,466 + Xcc-8004.3137.1 0.25 +0.4 3,058,466 + Xcc-8004.3137.1 0.25 -1.2 3,058,467 - Xcc-8004.3137.1 0.25 -0.8 3,058,467 - Xcc-8004.3137.1 0.25 -0.9 3,058,467 - Xcc-8004.3137.1 0.25 +0.3 3,058,467 - Xcc-8004.3137.1 0.25 -2.2 3,059,071 - Xcc-8004.3137.1 0.80 +0.3 3,059,124 + Xcc-8004.3137.1 0.85 -2.7 3,059,124 + Xcc-8004.3137.1 0.85 +0.6 3,059,125 - Xcc-8004.3137.1 0.85 +0.8 3,059,125 - Xcc-8004.3137.1 0.85 -1.2 3,059,390 + -2.2 3,059,390 + +1.4 3,059,390 + -0.5 3,059,391 - +0.1 3,059,391 - -0.6 3,059,391 - -0.6 3,059,888 - -1.5 3,059,888 - +1.9 3,059,888 - +0.0 3,059,888 - -2.3 3,059,888 - -0.1 3,059,888 - -0.4 3,059,888 - +0.8 3,059,888 - +0.2 3,059,888 - -1.6 3,059,888 - +1.0 3,059,888 - -3.0 3,059,888 - +1.2 3,059,955 - -1.2 3,060,693 - -0.9 3,060,693 - -1.6
Or see this region's nucleotide sequence