Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.287.1

Experiment: Xylemvessel barcodes T0L1P4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.285.1 and Xcc-8004.287.1 overlap by 4 nucleotidesXcc-8004.287.1 and Xcc-8004.288.1 are separated by 126 nucleotidesXcc-8004.288.1 and Xcc-8004.289.1 are separated by 291 nucleotides Xcc-8004.285.1: Xcc-8004.285.1 - FIG01210106: hypothetical protein, at 271,800 to 274,301 Xcc-8004.285.1 Xcc-8004.287.1: Xcc-8004.287.1 - Haloalkane dehalogenase-like protein, at 274,298 to 275,200 Xcc-8004.287.1 Xcc-8004.288.1: Xcc-8004.288.1 - Ferredoxin, at 275,327 to 275,755 Xcc-8004.288.1 Xcc-8004.289.1: Xcc-8004.289.1 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 276,047 to 277,717 Xcc-8004.289.1 Position (kb) 274 275 276Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.384 kb on + strand, within Xcc-8004.285.1at 273.384 kb on + strand, within Xcc-8004.285.1at 273.384 kb on + strand, within Xcc-8004.285.1at 273.384 kb on + strand, within Xcc-8004.285.1at 273.384 kb on + strand, within Xcc-8004.285.1at 273.385 kb on - strand, within Xcc-8004.285.1at 273.385 kb on - strand, within Xcc-8004.285.1at 273.437 kb on - strand, within Xcc-8004.285.1at 273.437 kb on - strand, within Xcc-8004.285.1at 273.676 kb on + strand, within Xcc-8004.285.1at 273.676 kb on + strand, within Xcc-8004.285.1at 273.677 kb on - strand, within Xcc-8004.285.1at 273.677 kb on - strand, within Xcc-8004.285.1at 273.677 kb on - strand, within Xcc-8004.285.1at 273.677 kb on - strand, within Xcc-8004.285.1at 273.688 kb on + strand, within Xcc-8004.285.1at 273.689 kb on - strand, within Xcc-8004.285.1at 273.689 kb on - strand, within Xcc-8004.285.1at 273.783 kb on - strand, within Xcc-8004.285.1at 273.783 kb on - strand, within Xcc-8004.285.1at 273.853 kb on + strand, within Xcc-8004.285.1at 273.853 kb on + strand, within Xcc-8004.285.1at 273.853 kb on + strand, within Xcc-8004.285.1at 273.853 kb on + strand, within Xcc-8004.285.1at 273.853 kb on + strand, within Xcc-8004.285.1at 273.909 kb on + strand, within Xcc-8004.285.1at 273.946 kb on + strand, within Xcc-8004.285.1at 274.026 kb on + strand, within Xcc-8004.285.1at 274.053 kb on + strandat 274.054 kb on - strandat 274.054 kb on - strandat 274.097 kb on + strandat 274.230 kb on + strandat 274.231 kb on + strandat 274.234 kb on + strandat 274.255 kb on + strandat 274.255 kb on + strandat 274.256 kb on - strandat 274.296 kb on - strandat 274.364 kb on + strandat 274.364 kb on + strandat 274.365 kb on - strandat 274.431 kb on - strand, within Xcc-8004.287.1at 274.431 kb on - strand, within Xcc-8004.287.1at 274.554 kb on - strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.877 kb on + strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 274.878 kb on - strand, within Xcc-8004.287.1at 275.129 kb on + strandat 275.129 kb on + strandat 275.198 kb on + strandat 275.198 kb on + strandat 275.335 kb on + strandat 275.336 kb on - strandat 275.336 kb on - strandat 275.692 kb on + strand, within Xcc-8004.288.1at 275.692 kb on + strand, within Xcc-8004.288.1at 275.693 kb on - strand, within Xcc-8004.288.1at 275.778 kb on - strandat 275.892 kb on + strandat 275.914 kb on + strandat 276.039 kb on - strandat 276.082 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes T0L1P4
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273,384 + Xcc-8004.285.1 0.63 -1.6
273,384 + Xcc-8004.285.1 0.63 -1.2
273,384 + Xcc-8004.285.1 0.63 -1.9
273,384 + Xcc-8004.285.1 0.63 -1.2
273,384 + Xcc-8004.285.1 0.63 -2.9
273,385 - Xcc-8004.285.1 0.63 -0.4
273,385 - Xcc-8004.285.1 0.63 -0.6
273,437 - Xcc-8004.285.1 0.65 -0.4
273,437 - Xcc-8004.285.1 0.65 -2.9
273,676 + Xcc-8004.285.1 0.75 +2.0
273,676 + Xcc-8004.285.1 0.75 -1.9
273,677 - Xcc-8004.285.1 0.75 -2.1
273,677 - Xcc-8004.285.1 0.75 -0.2
273,677 - Xcc-8004.285.1 0.75 -2.1
273,677 - Xcc-8004.285.1 0.75 +0.8
273,688 + Xcc-8004.285.1 0.75 +2.4
273,689 - Xcc-8004.285.1 0.75 -0.1
273,689 - Xcc-8004.285.1 0.75 -1.6
273,783 - Xcc-8004.285.1 0.79 -1.2
273,783 - Xcc-8004.285.1 0.79 +0.4
273,853 + Xcc-8004.285.1 0.82 -0.1
273,853 + Xcc-8004.285.1 0.82 -3.0
273,853 + Xcc-8004.285.1 0.82 -0.7
273,853 + Xcc-8004.285.1 0.82 +0.8
273,853 + Xcc-8004.285.1 0.82 +1.0
273,909 + Xcc-8004.285.1 0.84 -0.6
273,946 + Xcc-8004.285.1 0.86 +2.9
274,026 + Xcc-8004.285.1 0.89 +1.2
274,053 + +2.6
274,054 - +0.9
274,054 - -0.8
274,097 + -2.0
274,230 + +0.2
274,231 + -0.9
274,234 + +1.5
274,255 + +0.0
274,255 + -2.9
274,256 - -1.1
274,296 - -1.6
274,364 + -2.1
274,364 + -3.0
274,365 - -1.1
274,431 - Xcc-8004.287.1 0.15 -0.7
274,431 - Xcc-8004.287.1 0.15 -1.2
274,554 - Xcc-8004.287.1 0.28 +1.2
274,877 + Xcc-8004.287.1 0.64 -1.2
274,877 + Xcc-8004.287.1 0.64 -1.4
274,877 + Xcc-8004.287.1 0.64 -0.2
274,877 + Xcc-8004.287.1 0.64 -0.1
274,877 + Xcc-8004.287.1 0.64 -1.2
274,878 - Xcc-8004.287.1 0.64 +0.6
274,878 - Xcc-8004.287.1 0.64 -1.3
274,878 - Xcc-8004.287.1 0.64 -1.2
274,878 - Xcc-8004.287.1 0.64 +1.0
275,129 + -3.2
275,129 + -1.2
275,198 + +0.6
275,198 + +3.3
275,335 + -0.7
275,336 - -1.4
275,336 - -1.6
275,692 + Xcc-8004.288.1 0.85 -0.3
275,692 + Xcc-8004.288.1 0.85 +3.0
275,693 - Xcc-8004.288.1 0.85 -1.6
275,778 - -0.3
275,892 + -1.0
275,914 + -3.4
276,039 - -1.6
276,082 + -1.7

Or see this region's nucleotide sequence